SimpleSearch - Line and FST details
Line specific information
Line ID | 492F05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N447201) |
Segregation Analysis | 50:40:32 |
Confirmed for Hit | At1g65080 |
Parent of DUPLO pair | 481 |
Parent of pair(s) | none |
Gene hit At1g04787
Sequence (A. th genome BLAST matches underlined) | >38-K019647-022-492-F05-8409 TGAGCATTTACTCGTAGATTTCTTTTTCTACATTTTTTTCTTTTTCTTCATATTGACCAA TCTGAAGAGCTATGGGATCCTCCCTATAGTGAGACTTCCCACCAGGCGGCTTATCTCTTG TACCTCGAATGGCTTCCTATCCCCTTCGATAGGCCCTCCCCGGAACGAGATCCAGTCGGA TTTTTCTCGGCATCAATCTTAATCCACCTTTGAATATTAAAGTTCTACAGAGAAGCTCAT GATTTCCCCCCTATCTCTCAATCTACCATAGCTCTTCACAATATTCTGTGAATACCTCAT TTGCTTATTAGATAACACTAGTCCGTTGTGGAGAACGTTTACAGATTATTACCCTGGTGC TGTCTTATTAAAAAAAGAGACAAAATCTTTGCTTGCTTTATGTACTCTATTTAACTATAA TTGGAAGCATATGATACGAATAAAAAATCATACCTTAAGCGATGTAAAGAAACTATAATT CTACGATAACAAACGAAAGCCCTTAATTAATTATACAATTATTAGATTATCCAATTACCT GGGGTAAGATTTACCAGAGGAAACAGAGGGGCTA |
GenBank Accession | FR811064 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr1:3406348 - go to primer design |
BLAST e Value | 6e-80 |
Hit Clone Code (BAC ID) | F14N23 |
Hit Gene Code | At1g04787 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | long noncoding RNA |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Gene hit At1g65080
Sequence (A. th genome BLAST matches underlined) | >38-K019641-022-492-F05-8409 TGGGATCCTCCCTATAGTGAGTCTACTCCACGCACCAGCTCAAAGCCTCCTCCTTCATCT CCCATTCTCCTCCGCTCGTGTCTCCCTCGCCGACGCGATCTCCGTAGCGATGGGCTCCTC TCCACAGATTGCTCTCTGCGGGACCAGAATTCCCAATTGGGTCTCAAGAAATCATCCCTA CCGATGATTCTTCTTTACCTGTTCTCGCCGTCGGTGATTTCCTCGAAGGCTTTCATGAAT TCACAGGATTGCCTTGGCGGATGATTATTGCATCTTCTACTGTTGCTGCTAGATTAGCTT TATTGCCTTTACTCATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGA AGTGTTAGTATTATTTCTCTACTTTATAAGTAGTTTTTATAATTTGCAGTTTCTTTATTG ATACCAAAGTCATGACCTTTCTACTATGG |
GenBank Accession | BX532569 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr1:24176619 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F16G16 |
Hit Gene Code | At1g65080 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |