SimpleSearch - Line and FST details


Line specific information

 
Line ID 492F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N447201)
Segregation Analysis 50:40:32
Confirmed for Hit At1g65080
Parent of DUPLO pair 481
Parent of pair(s) none

Gene hit At1g04787

 
Sequence (A. th genome BLAST matches underlined) 
>38-K019647-022-492-F05-8409
TGAGCATTTACTCGTAGATTTCTTTTTCTACATTTTTTTCTTTTTCTTCATATTGACCAA
TCTGAAGAGCTATGGGATCCTCCCTATAGTGAGACTTCCCACCAGGCGGCTTATCTCTTG
TACCTCGAATGGCTTCCTATCCCCTTCGATAGGCCCTCCCCGGAACGAGATCCAGTCGGA
TTTTTCTCGGCATCAATCTTAATCCACCTTTGAATATTAAAGTTCTACAGAGAAGCTCAT
GATTTCCCCCCTATCTCTCAATCTACCATAGCTCTTCACAATATTCTGTGAATACCTCAT
TTGCTTATTAGATAACACTAGTCCGTTGTGGAGAACGTTTACAGATTATTACCCTGGTGC
TGTCTTATTAAAAAAAGAGACAAAATCTTTGCTTGCTTTATGTACTCTATTTAACTATAA
TTGGAAGCATATGATACGAATAAAAAATCATACCTTAAGCGATGTAAAGAAACTATAATT
CTACGATAACAAACGAAAGCCCTTAATTAATTATACAATTATTAGATTATCCAATTACCT
GGGGTAAGATTTACCAGAGGAAACAGAGGGGCTA
GenBank Accession FR811064 [GenBank]
Graphic View Graphic view of gene At1g04787
Predicted Position of Insertion Chr1:3406348 - go to primer design
BLAST e Value 6e-80
Hit Clone Code (BAC ID) F14N23
Hit Gene Code At1g04787 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation long noncoding RNA
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At1g65080

 
Sequence (A. th genome BLAST matches underlined) 
>38-K019641-022-492-F05-8409
TGGGATCCTCCCTATAGTGAGTCTACTCCACGCACCAGCTCAAAGCCTCCTCCTTCATCT
CCCATTCTCCTCCGCTCGTGTCTCCCTCGCCGACGCGATCTCCGTAGCGATGGGCTCCTC
TCCACAGATTGCTCTCTGCGGGACCAGAATTCCCAATTGGGTCTCAAGAAATCATCCCTA
CCGATGATTCTTCTTTACCTGTTCTCGCCGTCGGTGATTTCCTCGAAGGCTTTCATGAAT
TCACAGGATTGCCTTGGCGGATGATTATTGCATCTTCTACTGTTGCTGCTAGATTAGCTT
TATTGCCTTTACTCATACTTCAACTCAAGAAATTGAAGACCATTTCAGAGCTGCTACCGA
AGTGTTAGTATTATTTCTCTACTTTATAAGTAGTTTTTATAATTTGCAGTTTCTTTATTG
ATACCAAAGTCATGACCTTTCTACTATGG
GenBank Accession BX532569 [GenBank]
Graphic View Graphic view of gene At1g65080
Predicted Position of Insertion Chr1:24176619 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F16G16
Hit Gene Code At1g65080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37