SimpleSearch - Line and FST details


Line specific information

 
Line ID 496F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N447586)
Segregation Analysis 50:6:4
Confirmed for Hit At5g67380
Parent of DUPLO pair none
Parent of pair(s) 3436, 3498, 3500

Gene hit At5g67380

 
Sequence (A. th genome BLAST matches underlined) 
>46-K019628-022-496-F06-8409
TTGATATATTGGGATCCTCCTTATACTTGCGCTTCTTCGATTCGCCTCTTCGACGTCTCT
TGTTACTGTGCGCCGTCTTATTCTTACCTCGCGCCAACGGCGCACTCTCCTATCCTACGC
TCATCTATCGTCACTCCCACAGCGAGAGCTGTCTCGGAAGTTTCCGGTTGTACTACGATC
GATCCAGATTTTCTCGTAGAGATCTCTGATTCTAACCAGACGCGGGCGATGTCGAAAGCT
CGTGTGTACACCGAAGTCAATGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTC
ATTGTTCAATGGGGGTAAGATTGTTAAACCCTA
GenBank Accession BX532977 [GenBank]
Graphic View Graphic view of gene At5g67380
Predicted Position of Insertion Chr5:26883359 - go to primer design
BLAST e Value 1e-155
Hit Clone Code (BAC ID) K8K14
Hit Gene Code At5g67380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation casein kinase alpha 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MIF21

 
Sequence (A. th genome BLAST matches underlined) 
>46-K019655-022-496-F06-8409
CTATGGGATCCTCCCGATATGTGACGATGTATAGATATCGCCATCTTTCTTGTATGGAAA
AGGATTCTGGGAAAGGGTCGATACACCACTTTCGATTGAATGGCAATGTTTTTTTTTTCT
TTAATAATTGAAAACTTTTGGGGTTTTTGTTTTGGGTTTTAAGTTTTGAATTGTTGGATT
TGTTCCGGAAAATTTAATATTAAAATCTTAATATAGGCTAATTTTCTAGGGGATCCTCCC
CTATAGGGGGAACACCCGATCCATTAACTCCTGATTGTATTTCGTNCTACTGTTAAAAAA
GCCCCCCCTTCGCAGAACAGAGCAGTGGTATTTTTTTTTTTTCCGGCCCGCCGGCGCGCG
GGGGTACTCAGGCCCCNCCCCAGATAACGATTATTCAGCCTGAAAAACAAAT
GenBank Accession BX532978 [GenBank]
Graphic View Graphic view of sequence BX532978 of line 496F06
Predicted Position of Insertion Chr5:19534772 - go to primer design
BLAST e Value 4e-10
Hit Clone Code (BAC ID) MIF21
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37