SimpleSearch - Line and FST details


Line specific information

 
Line ID 497E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N447668)
Segregation Analysis N/A (line seemingly not resistant, T2 plants grown without drug)
Confirmed for Hit At1g61890
Parent of DUPLO pair none
Parent of pair(s) 3628, 3638, 3774, 86179, 86199, 86229, 86241, 86270, 86282, 86315, 86322, 86344, 86347, 86355, 86357, 86360

Gene hit At1g61890

 
Sequence (A. th genome BLAST matches underlined) 
>29-K019698-022-497-E04-8409
GTAAACGCATAACTAGATGACGTGAAGCCACAAAATGACCACGATGGCTTAGAAAACCGA
TAGTAAGAATGATACTCCCAATGACACGACAGTGGAGTAACGCAGATGCATCTCGAGATT
CCGGCTCCTATGGGATCCTCCCTATAATGAGACCTGGAANAGCAAATAAAGAGAGATAAT
GTAATTAGCATGACAAGGACATCTGCTTGAGTTTCATGAAGATGGTGAAGCTGTAGGAGG
TAGCGACCAAGACTTACCATAAGATGATGTTCACTTACCAAAATATGGGATACACGCTAT
AGTGAAGGGAACTCCCTATAGAGAGATTGATTCTAATAGAGA
GenBank Accession BX533062 [GenBank]
Graphic View Graphic view of gene At1g61890
Predicted Position of Insertion Chr1:22868804 - go to primer design
BLAST e Value 1e-19
Hit Clone Code (BAC ID) F8K4
Hit Gene Code At1g61890 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37