SimpleSearch - Line and FST details
Line specific information
| Line ID | 500A03 |
| Vector Used | pGABI1 |
| Line Availability | available as T3 set from NASC (N447907) |
| Segregation Analysis | 50:34:25 |
| Confirmed for Hit | At5g44490 |
| Parent of DUPLO pair | 12683 |
| Parent of pair(s) | none |
| Note |
Gene hit At1g06740
| Sequence (A. th genome BLAST matches underlined) | >17-K019569-022-500-A03-CR3S ATTCCTAAAACTAGATGCATCGAGCCATCCTGCTCAAATCAACAGAGACAAATGGCAATG CGTATGGGATCTACCCTATATGTGAGAGGTGAAGATGGCAACTAGTAAATTATACTTACC ATCTCTTCGACAATCCAATTCGTTTAGGTCCGCATAGCGATTTTAGATTGAACGTATGAG ATCCACCCTATAGGGAAATTATCTTCTTGGAATGCAGAGTAGGGTATCCTCCCTATAGTG AGAAGTAATTCCATGGAGAGGCATACTCTACATCGAAATGTCTTGAGAGTGGATCATTGA GGTCTGTGTAATCAGTACCGGCCATTTCAGAACAACTTGCACTGCTCCTATGTAATGTAA CAATCCTATGGGATCCTCGCTATAGTGAGAATTGTGCGGAAGCACCAAAAGATGATCACG GTTGGGGACGCTCGATTGATTGAGAGATTCTTGAAAACTAATT |
| GenBank Accession | BX536977 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2073071 - go to primer design |
| BLAST e Value | 1e-19 |
| Hit Clone Code (BAC ID) | F4H5 |
| Hit Gene Code | At1g06740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MuDR family transposase |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g44490
| Sequence (A. th genome BLAST matches underlined) | >17-K019568-022-500-A03-8409 GGATCCTTCTTATAGTGAGTCGTATTACTCAGCACTACTTCTGCGGCTATAGGATTCTTC ATAATATTTAGTATTCGTACCTATAATAAGAGAGGTCACTGAGTTATGCATAGCTCCTTC GTAAATCATTTATAGGAATCAAAAACAACCAAGATATGAGATGTGAAAAACATACTAATC CAAATGTGCAATTTAGTTAAAAATGTTATAGACAACTGTTAAGTAAAAATGAGGAAAAAG TGACCAGTTATTAATGATGTTATTATATCGTTGAAAAATTTTGATACAAATCGGAAACCT AATCGTATTTTCCAACTTAAACAAAGTAAAAGAAAAAAAAAAGAAAAAAAAGAAGGCAAG GGTTAACATTATGGGTTTCTAAGTTCTAATTTTTAGAAGGAGGCTCCGCCAACAGTTTTT GAACATTGTTCCTTTAGCATAGGAGGAAAAAACGGATTGAACGGAAGTTGCGGAATACAA TTGGGTTCGGCTTCCCAAATGGCTTTGCAACAAGCTGAACCTATCTGGCCGAACTTTTCT AAGAGTATGGATTGGGAAAACTCTACGATGGCCCCGGGAAATTTTATCACCGATGAAAAA CATTTTG |
| GenBank Accession | BX533317 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17925969 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MFC16 |
| Hit Gene Code | At5g44490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein |
| Insertion Classification | 3' region |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR811200 [GenBank] BX536976 [GenBank] BX536975 [GenBank] BX533317 [GenBank] |
Gene hit At5g60730
| Sequence (A. th genome BLAST matches underlined) | >17-K019570-022-500-A03-CR3S TTGATTTGACTTGTCAATACTTCTATCAATAAAGTTNCTATTCCTAAAACTCAGATGCAT CGGCCATGCCTGCTCTACATCATCAGAGACAAATGGCAATGTGTATGGGATCCTCCCTAT ATGTGAGAGATGTGGACGCCACCTAGTTAGTTATTGTAATCCATCCCATCGGTAACACCA TTCTTTTACTTGTTCCTAGAGATTTTAATTTGTATTAAGAAGTCACCTGGCTTGGAAATT ATCTTCTTGGAATCCTGGGTATGGGATCCTCCCTATAGCGAGAAGTGATCTCATGGCGAG GGATACACTCCATCGAATCGTCTGAGAGTGGATCATTGAGGTCGGTGTAGTCAGACAGGC CATTTCTGAACAACTTGCACTGCTCCTATGTAATGTAACAGTTGTA |
| GenBank Accession | BX536978 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24424738 - go to primer design |
| BLAST e Value | 6e-37 |
| Hit Clone Code (BAC ID) | MUP24 |
| Hit Gene Code | At5g60730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Anion-transporting ATPase |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 556F03 |
|
Last Updated on 10.06.2021 13:37 |
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