SimpleSearch - Line and FST details
Line specific information
Line ID | 500E12 |
Vector Used | pGABI1 |
Line Availability | available as T3 set from NASC (N447964) |
Segregation Analysis | 50:24:20 |
Confirmed for Hit | At5g27620 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g27620
Sequence (A. th genome BLAST matches underlined) | >93-K019329-022-500-E12-CR3S CCGTGTATTTGCTACCTTTCGTCTCCCCAGACTCGATTCACTTGCAAAACTGTAACAACA CGAGCAGCTCGGTCTTGCGACTTCAAGAATCTACATGTAGATCGTTGTGTTGATTATGTC CACCAGAGACAACAACGACAAGGAATCGTTTCTTCTCTTTAGAAACACTATGGGATCCCG CCTATAGTGAGAATGCTGGAGAACGTCTGTTAGAATAATTGTTGATATGGAGCTTTAGTC CTGTATTCATGTTTAGATTTTAACTTATTGTTATTCATAGTGTGGAACAACTCAAGTTGA AGTAGATGCTATGGGATCCTCCCCTATAGTGAGNAGTATGGGATCCTCCCTATAGCGAGA CGGNNNAAAACGAACCAATAAAGGGAGACNACGGTTACGACCCACTTGGTTTCGATTTTG GCTTCCGGGAATTTCAAACTTTTTGGAATCAAATGTTTTCAAAGAGAT |
GenBank Accession | BX537048 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:9771909 - go to primer design |
BLAST e Value | 1e-56 |
Hit Clone Code (BAC ID) | F15A18 |
Hit Gene Code | At5g27620 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | cyclin H;1 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX537047 [GenBank] |
Gene hit At5g63390
Sequence (A. th genome BLAST matches underlined) | >93-K019567-022-500-E12-CR3S GATCTGTACATACTTCGATCAATAAATATCTAATTCCTAAAACAACATCCAGGGGTATGG GAGCCTCCCTATAGTGAGTCGTATTACTCATCGATTCACTTGCAAAACAGGAACAACAAG AGCAGCTCGGTCTTGCAACTTCAAGAATCTACATGTAGATCGTTGTGTTGATTAAGTCCA CCAGAGACAACAACAACAAGGAATCGTTTCTTCTCTTTAGAAACACTAGCTGATTTCTTC TTGCATGGGATCCTCCCTATAGTGAGNCGTATTACTC |
GenBank Accession | BX537049 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:25391973 - go to primer design |
BLAST e Value | 2e-36 |
Hit Clone Code (BAC ID) | K9H21 |
Hit Gene Code | At5g63390 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | O-fucosyltransferase family protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | BX537050 [GenBank] |
Last Updated on 10.06.2021 13:37 |