SimpleSearch - Line and FST details


Line specific information

 
Line ID 504D05
Vector Used pAC161
Line Availability available as T3 set from NASC (N448329)
Segregation Analysis 50:43:39
Confirmed for Hit At3g57310
Parent of DUPLO pair none
Parent of pair(s) 85614, 85615, 85618

Gene hit At3g57310

 
Sequence (A. th genome BLAST matches underlined) 
>36-K019717-022-504-D05-8409
CCATAGCGACTGTATTATTCGTGGCATCTGTTATGATCATCATGTCACCTCTGGCTCCAC
CAGAGCAACTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTGACAAA
CCTCATGTCATGCCTGCCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGTTGCGA
GATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGTCTCCAACGTTTGGTCA
CTATGTCATCCCTCAAAATGCTCACAAACTTCTATGGGATCCTCCCTATAGTGAGA
GenBank Accession BX533844 [GenBank]
Graphic View Graphic view of gene At3g57310
Predicted Position of Insertion Chr3:21208506 - go to primer design
BLAST e Value 1e-139
Hit Clone Code (BAC ID) F28O9
Hit Gene Code At3g57310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit K23L20

 
Sequence (A. th genome BLAST matches underlined) 
>36-K019705-022-504-D05-8409
TGGGATCCTCCCTATAGTGAGATCTCTATAGGTGGCATCTGCATGGGCACGCGGTCGTCA
CTGGCTCCAGCACACCGACTGAGGTTGGATGTTGGGGTATTTATGAGAACTCGGCATGCA
TACTGATCATCCTTCTGTCTTGCCTGCCGGCGATACTCAAAGGAAGACCCCCACCGATAT
ATTGTTGCTAGATGCTGAAAGAGCAGCGGTCTTGTCTCTCCGGTTACATACAAGTCTCCA
ACGTTCTGGTCACTATGACATACCTGAATAAGCTCACCCACTCCTATGGAATCCTCCCTA
TCATAAGGCTCAGATTTGATGAAGATGGTGTTTTTCCAAAACGAATGACCAGCATTTTCA
ACATATCTGAACGAGATTCATACCGACAAGGAAGAATTCACTACTTTTTCTTTATCTTTA
ATTTCTCGTAATGCAAATGTTAAAGCGGATTATTTGGCACGAAAAGTCGTGTATAACTGC
TACACATTGTTTATGTAACACCCTTTCTGCCATTTCGACTCCTTCCGATCCCAACCAATA
TCTGACAAAAAAAACCAAAAACACCCCTACTATTTGTACATCTCCATCATTCGTGTTTTA
CAAACCCCTAAAATAAAACTTTTCTTTCCACAACCTCATAAAATTTCTACCATCATTGCT
TGAAATTTTTTATGGACAGATAGTTAAATG
GenBank Accession BX533843 [GenBank]
Graphic View Graphic view of sequence BX533843 of line 504D05
Predicted Position of Insertion Chr5:18063345 - go to primer design
BLAST e Value 1e-90
Hit Clone Code (BAC ID) K23L20
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37