SimpleSearch - Line and FST details


Line specific information

 
Line ID 506B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N448504)
Segregation Analysis 50:49:48
Confirmed for Hit At5g33280
Parent of DUPLO pair none
Parent of pair(s) 3723, 9745, 10837, 66625

Gene hit F7D19

 
Sequence (A. th genome BLAST matches underlined) 
>90-K019739-022-506-B12-8409
TGATCTGAGATTTCCNGGACATGAAGCCATTTACATTGAATACATTGTTGATCGATGTAG
ATCTGATCTGGCTACACTCGGAACCCTGACGCATATGGGAGCCTCCCTATAGAGAAATAA
TACATTTTCTTTTATAGGGTGGGATAACTGATTTACTTTATACTTCCATATTCTTTTTTC
AAAACACATGTTTTTTCTAATCTTCTTATTGGAGTTAATTTGATTTAAATTAAGTTAAAT
TTTTGTTGTTTTATGAATTTGGCCAAAAAGATATTTGCATCTTAAGGTTCATGTAAAAGA
AAACATATCTTCATTTTTTTTTACTTCCTATGGGATCCTCTCCTATAGGGAGACAAACTA
GAAATACCACTAAGCTTATTCCTACAGACGCACACACTCCAGTGCACGTATGCATGATTA
CAAACAGTTTTTTCTGTCCAGGAAAGGGGTAACTTGGAAAATCCTCCTCGGTTGTGCAAT
ATCTATTTTCATGACCTGCCTGCTTTTCAGATCACCATTTCTTGCATCATGCCAACCTTG
TACTGGTTATGCCTCACAGGAGTGACCAACAATTGGACGGTCTGGAAACTTTAGGAAATA
CCAATGCCCTCC
GenBank Accession BX534043 [GenBank]
Graphic View Graphic view of sequence BX534043 of line 506B12
Predicted Position of Insertion Chr2:17845315 - go to primer design
BLAST e Value 3e-72
Hit Clone Code (BAC ID) F7D19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g33280

 
Sequence (A. th genome BLAST matches underlined) 
>90-K019732-022-506-B12-8409
TATGAATTTGGCCAAAAAGATATATGCACTTTAAGGTTCTTGTAAAAGAGAACATATCTT
CATTTTTTAATACTTTCAAAGGGATCCTCNCTAGAGGGAGACTATCCACATTGACCATCA
TACTCATTCGCTGAGACAAATAGACTCCACTGAGCGGATTCCTGATGACAAAGAGTCTTT
GCTGTCCAGGAAAGGGGTTACTTGGAAAATCCTCCTCGCTTGTGCGATAACGATTTTCAC
GTCCTGCCTTCTTTTAGGATTACCATTTCGTGCATCATGCCAACCTAGACCTGTCGATGC
CTTACAGGAGTGCCCTACAATTGGACGGTCTGGAAACTTTAAGAAATACCAATGCCCTCT
CTGGTCACTACAATGATCTATGGGATCCTCCC
GenBank Accession BX534042 [GenBank]
Graphic View Graphic view of gene At5g33280
Predicted Position of Insertion Chr5:12550412 - go to primer design
BLAST e Value 2e-89
Hit Clone Code (BAC ID) T29A4
Hit Gene Code At5g33280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Voltage-gated chloride channel family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37