SimpleSearch - Line and FST details


Line specific information

 
Line ID 510E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N448916)
Segregation Analysis 50:35:24
Confirmed for Hit At1g52580
Parent of DUPLO pair none
Parent of pair(s) 6730, 6735, 6738, 6740, 6741, 6742, 10729, 10734, 10745, 10747, 10750, 72905, 72942, 72975, 73005, 73036, 73064, 73093, 73148, 73175, 73200, 73228, 73229, 73231, 73233, 73234, 73235, 73236, 73237, 73238, 73239, 73241, 73242, 73243, 73244, 73245

Gene hit At1g51820

 
Sequence (A. th genome BLAST matches underlined) 
>29-K019520-022-510-E04-8409
AAAATATAGCGCGATGATTCGTCTTACTGTCCACAATAATGACCCCTATCTATACATATC
ATGCTATGCATATAAGGATATATGATGTTCATGCGCCGCTTTTAAACGCCTCGAGTCTGC
TACATAATTAGATAATTGAGACCTTTTTTTTCAGGATGGAAAATAATTCGATTTCCATAG
AACAAGTTGTGAGAAAATGACAAACTCTTTAGTTTTTTGGTCAACCATGACAAGAGGGCG
AATTTTTTTTTTTGTCCCCCCCCCCCCCCAGANCAGGAAACCGNNAACGCAAAAAAACAC
GCTTTATTTAAGAAAAAAAAAACGTCGAGGGGGGGTGGGGGGCCCCTTATAGTGAGAACA
CCCACGCCGCCCCGGTTCTCGTCTATGCGTAGACGGCGCCTGTCGGGGAGCGGCCGCCGT
GACCCCCGGGGCGCAGAGAGGAGAAGGCGCCCGCACCCCCAGGAGTAACAACATAACCCG
GCCCGGCGCGGCAGTAGAGGATGCACTCAGCGAAAGCGCGAACACGGACGGCGAGAAGCA
GGCCGCGGAGAAAAAAAAACAGAACGCGATGAGATAAGACGTACCACCCCCGAAGCGCGA
AAAACGGAAGAGCAGNACCAAAACGAAGAAGGAGAGGGAGGAG
GenBank Accession BX534568 [GenBank]
Graphic View Graphic view of gene At1g51820
Predicted Position of Insertion Chr1:19241798 - go to primer design
BLAST e Value 3e-60
Hit Clone Code (BAC ID) F19C24
Hit Gene Code At1g51820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX534569 [GenBank]

Gene hit At1g52580

 
Sequence (A. th genome BLAST matches underlined) 
>29-K019542-022-510-E04-8409
TACTGAGGACGGAGAAGAAGGACGAACCCGAGGAAGAAACCAGCTATGGGATCCTCCCTA
TAGTGAGATTATTTGAACTCCCCCCTCCCGTGCGTACGCGAATGAATACCCCGCATGGTA
ACCTTTTCTTT
GenBank Accession BX534570 [GenBank]
Graphic View Graphic view of gene At1g52580
Predicted Position of Insertion Chr1:19588637 - go to primer design
BLAST e Value 7e-15
Hit Clone Code (BAC ID) F6D8
Hit Gene Code At1g52580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RHOMBOID-like protein 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37