SimpleSearch - Line and FST details


Line specific information

 
Line ID 511F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N449021)
Segregation Analysis 50:36:26
Confirmed for Hit At5g42860
Parent of DUPLO pair 2508
Parent of pair(s) none
Note

Gene hit At1g20510

 
Sequence (A. th genome BLAST matches underlined) 
>06-K021274-022-511-F01-8409
AGACACTGTGTCCTATGGGATCCTCCCTATAGTGAGACACCCTGACTTGATCGCCCTCAG
GGATCCTTCCTATAGTGAGAACCCCACCTTCGCCCAGCTATGGCGTGCCCTGGAATCCGT
CGCCGATTGTCTCTCCGAGATAGGGATTCGCAAAGGCCACGTCTTCCTCCTCCTCTCCCC
AAACTCTATTTTATTCCCCGTCGTTTGTCCCTCCGTCATGTCACTATGGGATCCTCCCTA
TAGTGAGACCAAGGCATCCCCCCAAAAATGAGCCCATCGCAACCCCCCTAACATGGGTTC
CGGTCCACCTTTCCCAGGTCCCCTTCCAAGGTGACCAATCCATTTCCTAACCCCCCGGCG
CCTTTC
GenBank Accession BX649892 [GenBank]
Graphic View Graphic view of gene At1g20510
Predicted Position of Insertion Chr1:7105797 - go to primer design
BLAST e Value 4e-61
Hit Clone Code (BAC ID) F5M15
Hit Gene Code At1g20510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation OPC-8:0 CoA ligase1
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 550H05

Gene hit At5g42860

 
Sequence (A. th genome BLAST matches underlined) 
>06-K021258-022-511-F01-8409
TTTTCCAAATAAACCCAAAAAGGTTCCGTTATACATTTTTTGGAAAAAACAAAGACAAAC
AAAAAAATCGGGGGGGGGCCCCCAAACCACCCCTTTGACAAAAATAATTTACACCCTTTT
TAAAAAACCTCCAAATTTAAAAACCTTACAAAGCCCAAACCAAAAGGGACCCGCAAAAAC
CTAAAATCACCCGAAAAAAAATTGACTTGAACCCCAAAAAAAGTCCCATGGTTACCG
GenBank Accession FR811414 [GenBank]
Graphic View Graphic view of gene At5g42860
Predicted Position of Insertion Chr5:17183923 - go to primer design
BLAST e Value 5e-05
Hit Clone Code (BAC ID) MBD2
Hit Gene Code At5g42860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation late embryogenesis abundant protein, group 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX534708 [GenBank] BX534708 [GenBank] FR811414 [GenBank]


Last Updated on 10.06.2021 13:37