SimpleSearch - Line and FST details


Line specific information

 
Line ID 511G10
Vector Used pAC161
Line Availability available as T3 set from NASC (N449042)
Segregation Analysis 50:40:30
Confirmed for Hit At4g17180
Parent of DUPLO pair none
Parent of pair(s) 5222, 5365, 5431, 10271, 79025, 79026, 79027, 79028

Gene hit At1g09095

 
Sequence (A. th genome BLAST matches underlined) 
>79-K021274-022-511-G10-8409
GAATGAGACCTCCACCATCCTGTTCGTTCTTTGTATACCCTAATACCTATAAAGACGCAT
CTATACTTGCCCTATGGGATCCTCCCTATAGTGAGACNNNATNNATCCTATANAAAGTTT
GANAATTTTTCTTCACTTTTAAATAAGGAATTCCCCCCCCANTATGAAAAAAANCCNACC
CTCACTATANTAAAACNATNTNACCCCCAAAATATTAAAACCCCCCNTANCTAAATAAAN
TTTNTACTCCNNCNAAAATAAAAAAANANNAAANAANANATATNATANNATATAAATAAC
TACTTTTNAAAATATTCATTAATTAAAATACAACACCTTCTACACNCCTTATTTAATAAN
AATNNATACATATTATNCCANCCTATTTATAAATNAATTAAAATAATTAATATTTCATCA
T
GenBank Accession BX649914 [GenBank]
Graphic View Graphic view of gene At1g09095
Predicted Position of Insertion Chr1:11032928 - go to primer design
BLAST e Value 9e-10
Hit Clone Code (BAC ID) F17F8
Hit Gene Code At1g09095 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At4g17180

 
Sequence (A. th genome BLAST matches underlined) 
>79-K019928-022-511-G10-8409
CCATTTAATGAAATTAAATACCCGAATATTATCAGGTATATTTCTTAACTAACATTATAC
TCAATATTATTCTATGGGATCCTCGCGATAAAGAGAGATCCTGTCCTTAGTATCTATGAG
AACTATGGTATTCTCCATAAATAGAGCTTTTTTGAGGGGAGTAGTCATCCGGTTCCGGAT
GGGCCTAACACTTACTATAATGCATTTGATGGGAACTTTGACACTCTTGTTGCTGCTCTC
ACCAAGCTTGGATATGGTCAAATGCCTATAGTTATTGGTGAGATTGGTTGGCCTACAGAT
GGAGCAGTTGGTGCTAATCTCACAGCAGCCCGGGTTTTTAATCAAGGGCTCATTAGCCAT
GTGTTGAGCAACAAAGGAACACCGCTCAGGCCTGGATCTCCTCCTGCGGATGTATATCTT
TTCGGTTTGCTTGACGAAGGAGCGAAAAGCACACTGCCTGGGTAACTTTGAGAGGCATTG
GGGAATCTTCTCTTTCGATGGACAGGCCAAGTATCGTCTCAACTTAGGGCTATGGGAT
GenBank Accession BX534739 [GenBank]
Graphic View Graphic view of gene At4g17180
Predicted Position of Insertion Chr4:9647094 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation O-Glycosyl hydrolases family 17 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX534739 [GenBank]


Last Updated on 10.06.2021 13:37