SimpleSearch - Line and FST details
Line specific information
| Line ID | 518D09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N449677) |
| Segregation Analysis | 50:14:12 |
| Confirmed for Hit | At4g19460 |
| Parent of DUPLO pair | 2772 |
| Parent of pair(s) | none |
| Note |
Gene hit At1g48590
| Sequence (A. th genome BLAST matches underlined) | >68-K019948-022-518-D09-8409 TCGGTTAAGCGCGCAATTGAACCCCCCTTTAATTTAGAAGTCCAAATTAATGTAAGCAAA CAAACTATGGGATCCTCCCTATAGTGAGATACACTGAATTGGTAGCCCTACGGGATACTC CCTATAAAAAGATAAAAATAACCTTCTCATTCTTGCAGCCCCCTTCCCATAATCCCACAC CTCAACAAAACCGCCAAAACGGCACGTCTGTGTTATCAACAGCCCTAACATCACAATACA ACCCCAACTACCCCAAACAACGACACTCCTTTTTATTAACAGGAACCACCAATAACGTTT AACCAATCAAACTACTTCACAACCGCTCGTGAGATATAAACAAACAAAGAACACTGAAAG ACGGAGCAACTTATACACTCCCTATTGCCCAAATAGGTCATTATCATACCTGCTTCACAG ACATATACTACTTCTGAACCCACCCATTCCAAATCCTTATTGTAATAAATCTCCCCAAGA AAAATAAACAGACCTTCACACAACAAAACTCCGCATACAATACTATAAACGGCACCACAC ACTGAAGCTGCATCCCGCTCCCTTTCCTAAATCCCCCATATTAATACACCCGCCGCCAAT GTACGTTTAGGCATTCTTCACCCCACCCCCCCCATACCCGTAAAACTCCCTGTTGTCTCA CACTTCTTGTCATACCCCCTTACAACCCCTCCTATTACACTTCAAACCCATCACTTATCC AT |
| GenBank Accession | BX535494 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:17964248 - go to primer design |
| BLAST e Value | 3e-11 |
| Hit Clone Code (BAC ID) | T1N15 |
| Hit Gene Code | At1g48590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Calcium-dependent lipid-binding (CaLB domain) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 518E09 |
Gene hit At4g19460
| Sequence (A. th genome BLAST matches underlined) | >68-K019972-022-518-D09-8409 AATTGTCTTCAGATTACCGCTATGGGATCCTCCCGTATAGTGAGTATACGGTGCCGTGCT TCCCAGATACTGGACGAAATCAGATTCTTCCACAACTACGCTCACCACATCGCTATCAGC GATAGCTGCGGAGAAATGCTAAGAGACGTTTACCAAATCCCTGAGAAAAGGGTTCATGTG ATCCTCAATGGAGTCGACGAGAACGGATTCACATCAGACAAGAAGCTACGTACTCTGTTT AGGTCAAAATTAGGGTTACCAGAAAACTCATCAGCGATTGTTTTAGGAGCTGCTGGGAGA TTAGTCAAAGACAAAGGACATCCATTGCTCTTCGAAGCTTTCGCGAAAATAATCCAAACG TATTCAAATGTTTACCTCGTAGTAGCTGGATCAGGGCCATGGGAGCAACGTTACAAGGAA TTAGGGGAAAAAGTTTCCATTTTGGGATCTCTAAACCCAAATGAGCTCAAGGGTTTCTAC AACGGGATCGATTTGTTCGTGAATCCAACGCTTAGACCACAAGGTCTTGATTTAACGTTA ATGGAAGCGATGTTGAGTGGTAAACCAGTGATGGCATCTATGGGACTCCCCCATTAAGGG AGAGACGGGNCCACAGATCTTGTCGGTACCTTTTGTTTTGTCCTCCAAAA |
| GenBank Accession | BX535495 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:10611212 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T5K18 |
| Hit Gene Code | At4g19460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-Glycosyltransferase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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