SimpleSearch - Line and FST details


Line specific information

 
Line ID 526C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N450426)
Segregation Analysis 50:45:43
Confirmed for Hit At2g20780
Parent of DUPLO pair none
Parent of pair(s) 11180, 30497

Gene hit At4g29900

 
Sequence (A. th genome BLAST matches underlined) 
>11-K020211-022-526-C02-8409
GGTTTCATGTTTACCAGTATAACTAATATAATTTTTACTGTAAGTTAACATGTCTTCAAA
CAGTAATCTCTTTACAAAAATTTGGTTCACCAGACTCTTGCAACTCAAAATTATGTGATG
CTACATTAATATCGGCTAAATTAACCACTATCACATCTTCAAGTGACATTGAGGATAGCT
ATTTACGTTTCAAAAATGTTCCGTATGCGAACGTCAAAATTGTCTAAATAGTCAGTAGTC
AATACGCTCTCTAAAATAAGTAACTAAATAAAATATTCAAATAAATATCTTCAGTATAAA
AAAGATTTGTATAAAAGTCAATATGTTA
GenBank Accession BX536406 [GenBank]
Graphic View Graphic view of gene At4g29900
Predicted Position of Insertion Chr4:14619565 - go to primer design
BLAST e Value 1e-116
Hit Clone Code (BAC ID) F27B13
Hit Gene Code At4g29900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation autoinhibited Ca(2 )-ATPase 10
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At2g20780

 
Sequence (A. th genome BLAST matches underlined) 
>11-K020218-022-526-C02-8409
TGACTCTATCGGAAGAAAATGGACCATGGGCCTTGGCTGCTCTCGTCTTCCAGACTGGTG
CTGCCGTGATGGCTGTCGCTCCGTCTTTCGAGGTTTTGATGATAGGGATAACTTTAGCCG
GCATTGGGATTGGGCTTGGTGTCATGATCGCTCCTGTCTACATCGCCGAGATATCCCCCA
CCGTAGCTATGGGATCCTCCCTATAGTGAGATACTCTGAGTCCTTAGAACCCTTTTGAAC
ATGAATGTTCACCCAACTCTTGCTACTCAAAATTATGTAATGCTATGTTGATTTCGGCCA
AACGAACCATTATCATATCTTCAATTGACATTGAAGATAACTATTCACGTTATTCTAATG
CGCCGTTCGCTAACTCCACGAGTGTCTATTTAGTCACTAGTGAATACTCTCTCTTCAATG
AATAACTATATAGGGAATTCCCCTTANTATCTTCAGTATGACAAAGATTTGTATAAAAGT
CAATATGTTAACTAATAAGTACCAAA
GenBank Accession BX536407 [GenBank]
Graphic View Graphic view of gene At2g20780
Predicted Position of Insertion Chr2:8948746 - go to primer design
BLAST e Value 3e-93
Hit Clone Code (BAC ID) F5H14
Hit Gene Code At2g20780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Major facilitator superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR397742 [GenBank] BX536407 [GenBank]


Last Updated on 10.06.2021 13:37