SimpleSearch - Line and FST details


Line specific information

 
Line ID 527H04
Vector Used pAC161
Line Availability available as T3 set from NASC (N450584)
Segregation Analysis 50:47:42
Confirmed for Hit At3g62270
Parent of DUPLO pair none
Parent of pair(s) 4464, 4472, 4610, 4614, 7311, 92860

Gene hit At5g36935

 
Sequence (A. th genome BLAST matches underlined) 
>32-K022479-022-527-H04-8409
NNNNGGCAGTATTCGGACATGAGCCTTTACAATTGAATATATCCTGACGCCATCTGATAG
TATTTGTTCCAGGCTCCCTCCTTTTTGCTAACTTCCGATAAAGTGACGGAGATTTGGGCA
TCGCAAGCCGAGGAGGTCTCCGGATATTACCCTTTGTTGAAGAGTCTCAATTGCCCTTTG
ATCTTCTGAAACTGTATCTTTGATATTTTTGGAGTAGACCAGCGTGTCGTGCTCCCACAG
GTAGACAATCATTATCTTCCTGTCATTGCGTCGCTGTACACTCTGCATGACTCTGTTCCC
CAGTCTATACGGCGAGATCCGTTAAGGCACCAACTAGTCCCTCTGACGCCATGTGAATAC
ATCCACACACCCCGCTTCTTCGACTAACTGAAGGAGCTGCGTAAACCACAATCAAATGCA
AGGTCTCTGTCTCACTCACAATCTTGCCGTGAATAAGCTGTTCAGACGATGCCACAACTG
TAACCACTCCCACGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX650044 [GenBank]
Graphic View Graphic view of gene At5g36935
Predicted Position of Insertion Chr5:14576879 - go to primer design
BLAST e Value 7e-54
Hit Clone Code (BAC ID) MLF18
Hit Gene Code At5g36935 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At3g62270

 
Sequence (A. th genome BLAST matches underlined) 
>32-K022478-022-527-H04-8409
GNAGCCATTTACAATTGAATATATTCTGTCCCAGAATTGGTTTCCGGGTAAGCTTTCGAT
TGCCATGACGGCAAATATAGCCCCAAAGGAGTGATGTAGGTATCAATTTAACGACAAGCA
TAGCTGCAACACACCCTCCAACCATTACTGCTTGAATCAAGTTGCTTACTCTCTGTTCTT
TGACTTCAAGTGGCAATAAATCATCAATCTCTTTCTCGATATCAAACAGAGTCTCATCAA
CTGGAGCATCGAGATTTCCTGTGAATGTTGTTGCTTGGATTGTTGATTCTCTTACCTCTT
TCAAACCCTACAGAACAGATAATTTATCCACCACTTACCCCCAAACCAAATTACTTTCCA
TTGAAAAGTTACACAGGATATTCTTTACCTGACGCTGTTGGTATACTAATGGAGTCTGCA
TTTGATTATAAACATCTTGCATGTTTCCATACAACTGTCCTATGGGATCCTCCCTATAGT
GAGATGATCCTGACGATCGTGAAAAGAAAATGGAGAAAAGAAGG
GenBank Accession BX650043 [GenBank]
Graphic View Graphic view of gene At3g62270
Predicted Position of Insertion Chr3:23043260 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T17J13
Hit Gene Code At3g62270 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation HCO3- transporter family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37