SimpleSearch - Line and FST details


Line specific information

 
Line ID 530G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N450857)
Segregation Analysis 50:5:4
Confirmed for Hit At1g65850
Parent of DUPLO pair none
Parent of pair(s) 4306, 4394, 78620, 78702, 78730, 78731

Gene hit At1g65850

 
Sequence (A. th genome BLAST matches underlined) 
>07-K020337-022-530-G01-8409
TTCATTATCCCTAATAGAGTTGGAAGATCGGTAAGTACATAATATAGTCATGAACATTTC
GGGTACGCTATTTAAAATAGATAAATTTCTATATGGGAGATCATAAATATTTGTAGATAC
ACATATATAATTTGTTGTGTTAAAAAGGATTAAGCCCGTATGTTCAGAAGGACGAACCAG
TTGCGAGAATCGGAACCAGTGGTTGTTCCCATTTTTGCCAGAGCTTGTCTCCATTTCCTT
ATAACCTCATTAGTTTTACCGGCACGATTATTTTTGAAGACATTCCCAAAATTTCCTGTG
AGCTTCTTAACATCGGATGGATCCACTCTATAAAAAATGGGGATCACTATTTGACTAAAT
TCTTCTTTGCATTTCATGATCTCCACCAACTCGTCAAGACACCAAGATGAAGAAGCATAG
TTCCTATGGGATCCTCCCTATAGTGAGN
GenBank Accession BX536595 [GenBank]
Graphic View Graphic view of gene At1g65850
Predicted Position of Insertion Chr1:24495634 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F12P19
Hit Gene Code At1g65850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class) family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit F19B11

 
Sequence (A. th genome BLAST matches underlined) 
>07-K020336-022-530-G01-8409
TATAGATTCAGTATATCTGTAACTACCTCGATAGTCGATATGTACCTCTTTCTATCGATG
GAAGCTTTCCAGAGAATACTCCTGTCTATTTAAACAATATATCAGTGTTGACAGTTGTCT
AAGCGGACAAAAGCGTCTATACCTTGGATCGCTTTTTATTTATCATTCACAAATTATAGT
CCGTAATGATGCGGACCCCCAAAAATAAAAGAAAACTGTTGCGGACTAACTGCAGACGGT
CTTTAAACTAAGTCTGCATCGCTTTATTGTCCATCCCAAAAATAGTATGGATTGGACTAC
TGACGGATGAGTTCGCACTAACCACAATATTCCGTTGAATATATCACTACGAGAAGTCAG
AACGGTTTAACTTAGTACAAACTATCCTTTGTCGTTCATTGATTATGAACAAAAGCATTC
AAATTCCCAAGACGTCTATATCTAAAAGTTTGCTTAGTAACCCGAAACGTTGTTTCGAAG
GGAACATGCAATTACATTACAT
GenBank Accession BX536594 [GenBank]
Graphic View Graphic view of sequence BX536594 of line 530G01
Predicted Position of Insertion Chr2:1134419 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F19B11
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR397885 [GenBank]


Last Updated on 10.06.2021 13:37