SimpleSearch - Line and FST details


Line specific information

 
Line ID 531F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N450946)
Segregation Analysis 50:46:32
Confirmed for Hit At2g39400
Parent of DUPLO pair none
Parent of pair(s) 96650, 96654, 96657, 96661, 96662, 96663

Gene hit At2g39400

 
Sequence (A. th genome BLAST matches underlined) 
>46-K020365-022-531-F06-8409
TTTAGAAAAGGATTTATTTTCTGTATAATCCCCGAAACCGAAACTGAATTATTCCATCAG
TTCACAGGCGTATGCTATGGGATCCTCCCTATAGCGAGTCCCCCGATGCTCCTCTTGGGC
GGGGGTACCTCTGTGGGATCATCCCCATTGGACGATTCTTTTTCGAAAATCTTACCTTTG
TCATAGCAATGACCCACCTTCGCTTCCCACTCCATTTCCACTATCCTGACCATAAACTGC
AAAATGTACTCGTAATAGCATCCTGGTATTAACCCTATATTCATATGATTTATGTGACCT
TTACAGGCCAGGGAGACCATCTATTGCTATTAAGGCCGGCCTCGCCTCTACACCATCTAC
CAACTCTTGTTGGTTATCTTAGATCTTGACAACAATCTTCAC
GenBank Accession CU589453 [GenBank]
Graphic View Graphic view of gene At2g39400
Predicted Position of Insertion Chr2:16453758 - go to primer design
BLAST e Value 5e-33
Hit Clone Code (BAC ID) F12L6
Hit Gene Code At2g39400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha/beta-Hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g06365

 
Sequence (A. th genome BLAST matches underlined) 
>46-K020372-022-531-F06-8409
AACTCTGGTGGAAGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATA
GGGGCGAAAGACTAATCGAACCACCTATGGGATCCTCCCTATAGTGAGCNCGCNTCGGAA
TTGGGAATTTTGGCTTATTTGGGATTTTGCCCGGGGGGAAGGCTACCTCTAGTACAGGAC
CAGTGGTTTGGGCGATACGTCCCAGG
GenBank Accession BX546624 [GenBank]
Graphic View Graphic view of gene At3g06365
Predicted Position of Insertion Chr3:14200960 - go to primer design
BLAST e Value 1e-39
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37