SimpleSearch - Line and FST details


Line specific information

 
Line ID 534G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N451245)
Segregation Analysis 50:41:34
Confirmed for Hit At2g42080
Parent of DUPLO pair 937
Parent of pair(s) none

Gene hit F6A14

 
Sequence (A. th genome BLAST matches underlined) 
>39-K020375-022-534-G05-8409
GTCGTTCTCCGATTATACATGTAGGATTTTTGAGAAACCCTTTGGTATCTTTATTGTTTG
GTCTGAAGGTATGTATATACTTTTTGTCTTTGATTAACCTATGGGATCCTCCCTATAGTG
AGACTATACGATCGTACCTTCCCTATAGTGAGCTAATTCGATCCGCCCTATTCCAAGGGG
ACTTGAAAAGAAAACTATGGAATCCTCCCTATAGTGAGATAATACGGATCTGCCATCTCC
TATGCGAACGTGAATGGAAACCTATTCTAATAACGAAATCGTAATTACAACAAGTTGACT
ATTGCTTACACATAGTAGTTCCATTTTTCGTGTATCCCACTATTAGGAGGATCCCATTTT
CTTTACTATAAGGACGATCCCATTTCTTCTATATTAAGGGATCT
GenBank Accession BX546825 [GenBank]
Graphic View Graphic view of sequence BX546825 of line 534G05
Predicted Position of Insertion Chr1:6481108 - go to primer design
BLAST e Value 3e-37
Hit Clone Code (BAC ID) F6A14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g42080

 
Sequence (A. th genome BLAST matches underlined) 
>39-K020363-022-534-G05-8409
CCGGACATGAGCCATTTACAATTGATCAATTGGTGTTTATGAGCTGAGAAGAATAGCTTT
GTGGTCGGAGAATCGCTGCTCTAATGGCGGCGTTCATCTCTGTGAGATCGGAGGAGAAAA
GTTTGTGTCTTTTTCGCCGTTTTGCAAAGGAAGAAACCAAAAGCCGATGTGGGTAACGTG
ACTCGGGCTTGACTCAGTCGATCTGACCCGGAAAAGGGCATTTTAATATTTACCGCCGGT
AACAACAATTTACTTTTCCTCTATTTACTTGTTTATTTTCTCTGCCTCACGAATATGTTG
ATATCACCGCAAACAGAGTGAAACCACTTGGAAATTAGAATGATTTTTAATAGGCTATGG
GATCCTCCCTATACTGAGACCAAAANAACCACCCCTTCCCCTTTTTTTTTCAATTTTAAA
ATTCCGATGNCCCCCCCCCCNNGGAAATGCAAATGAAGGGACATTTTGATAAAACGACAA
ATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATC
TTTATTT
GenBank Accession CU589630 [GenBank]
Graphic View Graphic view of gene At2g42080
Predicted Position of Insertion Chr2:17555413 - go to primer design
BLAST e Value 8e-180
Hit Clone Code (BAC ID) T6D20
Hit Gene Code At2g42080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Chaperone DnaJ-domain superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37