SimpleSearch - Line and FST details


Line specific information

 
Line ID 535E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N451324)
Segregation Analysis 50:38:37
Confirmed for Hit At1g02750
Parent of DUPLO pair 12248
Parent of pair(s) none

Gene hit At1g63770

 
Sequence (A. th genome BLAST matches underlined) 
>93-K020488-022-535-E12-8409
AGCCATTTACATTGAATATATCCTGAGAACACAAGCTTAACTACCTATTTTTTTCTTTGG
TGTGATTATAGGTTGCTTCTCGTATGGTGTCTGCCTTTTCCAGGTGGAAGCGGTACGATG
AAACCCGTCAAGGCCTATGGGATCCTCCCTATAGTGAGATCATCATCANCATCCCTCTAA
ACTTGTTTCCGATCAATTTTTATCGATATCCCTCTGTTCTGCATTACCAAACCAAAGCAA
CCTCCCTTTTGCCGGATTCTAGCGAATCCTACCTATAAACTGGTTAAGGATATATCCAAA
TTATTCTATTTCGGAACTCTTTATTTCGACTTGGATACATTCACGTCCAAAAGAGGAGCT
ACCAATTCAGTGTACCCCATTA
GenBank Accession BX546895 [GenBank]
Graphic View Graphic view of gene At1g63770
Predicted Position of Insertion Chr1:23658153 - go to primer design
BLAST e Value 1e-36
Hit Clone Code (BAC ID) F24D7
Hit Gene Code At1g63770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Peptidase M1 family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown
Other FSTs Supporting this Hit BX546894 [GenBank]

Gene hit At1g02750

 
Sequence (A. th genome BLAST matches underlined) 
>93-K020488-022-535-E12-8409
AGCCATTTACATTGAATATATCCTGAGAACACAAGCTTAACTACCTATTTTTTTCTTTGG
TGTGATTATAGGTTGCTTCTCGTATGGTGTCTGCCTTTTCCAGGTGGAAGCGGTACGATG
AAACCCGTCAAGGCCTATGGGATCCTCCCTATAGTGAGATCATCATCANCATCCCTCTAA
ACTTGTTTCCGATCAATTTTTATCGATATCCCTCTGTTCTGCATTACCAAACCAAAGCAA
CCTCCCTTTTGCCGGATTCTAGCGAATCCTACCTATAAACTGGTTAAGGATATATCCAAA
TTATTCTATTTCGGAACTCTTTATTTCGACTTGGATACATTCACGTCCAAAAGAGGAGCT
ACCAATTCAGTGTACCCCATTA
GenBank Accession BX546895 [GenBank]
Graphic View Graphic view of gene At1g02750
Predicted Position of Insertion Chr1:603735 - go to primer design
BLAST e Value 6e-14
Hit Clone Code (BAC ID) T14P4
Hit Gene Code At1g02750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Drought-responsive family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37