SimpleSearch - Line and FST details


Line specific information

 
Line ID 535H06
Vector Used pAC161
Line Availability available as T3 set from NASC (N451354)
Segregation Analysis 50:48:26
Confirmed for Hit At3g06760
Parent of DUPLO pair none
Parent of pair(s) 95210

Gene hit At4g34390

 
Sequence (A. th genome BLAST matches underlined) 
>48-K020487-022-535-H06-8409
AATCAGTCACATGAATGGATCTTCGCACTACTACATATACAACAGACATACACACAGTAG
AGAGAAACAAACTTATGTAATTTCCACAAAGAAAGAAAGAATTTTAGGAAAAAATATCAA
GAGGACGAGCTGGCCTCTATGCTATGGGATCCTCCCTATAGTGAGANCCACGGTATCCCC
CCTTCCCTTACCTATCTTAATCTCTCCCTTCCCAATTTACCTTCTATCCACAAAAAACAT
ATCTTTTCTACCTTTTTCCCCTACTATCAAATCCTCCCTATACTAATAAATATACAAATC
CATATACTAATTATTCTACTTCCTAAATCTTTATTTCAACC
GenBank Accession BX546915 [GenBank]
Graphic View Graphic view of gene At4g34390
Predicted Position of Insertion Chr4:16444955 - go to primer design
BLAST e Value 1e-61
Hit Clone Code (BAC ID) F10M10
Hit Gene Code At4g34390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation extra-large GTP-binding protein 2
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At3g06760

 
Sequence (A. th genome BLAST matches underlined) 
>48-K020488-022-535-H06-8409
GGACATAGCACGACGTAGAGAGAAACAAACTTATGTAATTTCCACAAAGAAAGAAAGAAT
TTTAGGAAAAAATATCAAGAGGACGAGCTGGCCTCTATACTATGGGATCCTCCCTATAGT
GAGAGCTCATCTGATAAGAAGAAACAACCGAGGTAGCCACAGAACAGTTCATCATCACGA
AGAACAGAAAAAAAAACTATTCCAACCTGTCCATTTTTTCTAACTATAAACCAAAATTTG
CCGCATTGGATCCCAACTAAGGCAAAAAACTGATCCCCCTAAAAATCAAACAAAGCCTCA
AAATATCTTTCCTAAACCTAAAGCAGGGTTTGATAAATGATCAATTATATTTACCCCTTT
CTTGGCTTCAACAGGATGTTCTTCCTCATTGTGACAACAAAGCCCACCATTGTCAAAATC
TTCACCCCAAAAAGGGCATATAAACTCTGCCTTCAAATCGTCTTC
GenBank Accession BX546916 [GenBank]
Graphic View Graphic view of gene At3g06760
Predicted Position of Insertion Chr3:2133674 - go to primer design
BLAST e Value 5e-113
Hit Clone Code (BAC ID) F3E22
Hit Gene Code At3g06760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Drought-responsive family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37