SimpleSearch - Line and FST details


Line specific information

 
Line ID 536D02
Vector Used pAC161
Line Availability available as T3 set from NASC (N451398)
Segregation Analysis 50:10:10
Confirmed for Hit At3g16150
Parent of DUPLO pair 2703
Parent of pair(s) none

Gene hit At3g13550

 
Sequence (A. th genome BLAST matches underlined) 
>12-K020490-022-536-D02-8409
CTGATAATTTTCTTGGCGACTATTTCTCTCGGTCACAAGTACAGAAGTAGTTGCTATCGT
TCCCTGCCTACCTATGGGATCCTCCCTATAGTGAGTTAATTTTTGTTTAAACATAATCAA
ATTTACTCTGTCAATTTTTATGAATAGCATGATTTACGTAAACTCTCCTATGAGGCTCTT
TTTTATTTGAATGTCAAATTATCATCCCTCTAATTCGAATATTTTAGTTGTAAGA
GenBank Accession FR811813 [GenBank]
Graphic View Graphic view of gene At3g13550
Predicted Position of Insertion Chr3:4425056 - go to primer design
BLAST e Value 1e-36
Hit Clone Code (BAC ID) MRP15
Hit Gene Code At3g13550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ubiquitin-conjugating enzyme family protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At3g16150

 
Sequence (A. th genome BLAST matches underlined) 
>12-K020489-022-536-D02-8409
AATCGAATATATCCTGAGATGTGACTGATATTGGATGAGATGATAACGCAAAGCTCCATA
ATTGTCTAGGGATCCTCTGTATAGTTGAGGCCGTGGATCTGCTTTGACGGAAAAAGGAAC
GGTTGAGATGGAAGCTATGGGATCCTCCCTATATTGAGAAAATGAAGGAACCTTCTGATA
ACAGGACATTTTAAGATCCGGCTTATTTTGAGGCGAGAGCAATATGCGACACATGCGGGT
TCGGAGTGATAGGGTGACACGTTGCTATTCGTCGAAATTAGAGGCAATAGCAATACCCAA
TTATTCTGATTCGGAAATGTTCACTTCTACGGGTCTACGGGAAGGTCGCAATGGGCAGCT
ACCAANTCAAGGGAAGAGCACTATCGGGGAGGATCCCTTAGGGNCAGGGAGAGGGNGNGG
CNCAGCNNTGAGAAAATGAGGGTACCTTTTGATAAAGCAGACAAATTACGATCCGTCGTA
TTTATAGGCGAAAGCAATAAACAAATTATTCTAG
GenBank Accession FR811812 [GenBank]
Graphic View Graphic view of gene At3g16150
Predicted Position of Insertion Chr3:5471994 - go to primer design
BLAST e Value 2e-23
Hit Clone Code (BAC ID) MSL1
Hit Gene Code At3g16150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37