SimpleSearch - Line and FST details
Line specific information
| Line ID | 540D06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N451786) |
| Segregation Analysis | 50:43:32 |
| Confirmed for Hit | At1g76900 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7534, 8630, 8631, 8639, 8644 |
Gene hit F2E2
| Sequence (A. th genome BLAST matches underlined) | >44-K020560-022-540-D06-8409 ACTGATGATGCATTTAGCTGTATGAACCAATTACAAGAGGCGAAATTGGAGTTAGAACAA ATGGGTAAATGGTAATTGATCTTCAAGGCTAAACAAACATTAATTATAATTTGCTTTGGA TCTATGGGATCCTCCCTATAGTGAGAAATACATCAACAATAAATTACGGAATTTTTATAT CTTCACTAACCAAGATCACCTCCGCCTTCTTATAGGAAAGATATGGGATCCTCCCTATAC GGAGAATGCATTCTCCTCCCACCACGGGTACCAAGAACGTTTANCTCATAAGAAACCTGC GCAATTTTGTAGCTCCCGCTATGGGATCCTCCCTATAGTGAGANGNNNNNNNNNNNNCNN NGNNNNNNNNNGNGNNNNNNNNNNNNNNNNNGNNNNNNGNGCNNGGGGCCCCACAAGCTA TGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX547378 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:7743604 - go to primer design |
| BLAST e Value | 3e-59 |
| Hit Clone Code (BAC ID) | F2E2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g76900
| Sequence (A. th genome BLAST matches underlined) | >44-K020532-022-540-D06-8409 CCATTTACATTGAATATCCGGACATGTATATTTTGTAACTGATGATGCATTTAGCTGTAT GAACCAATTACAAGAGGCGAAATTGGAGTTAGAACAAATGGGTAAATGGTAATTGATCTT CAAGGCGAAACAAACATTAATTATAATTTGCTTTGGACCTATGGGATCCTCCCTATAGTG AGAGATTCGTCGAGAATAGAGCGCGGGACAATGATATCGGGCTGTCCAGGCACAGTTCCG CCTTCCGCAAGGGAAGAGGCGGGAATTGAGTTCATCGCACAATGCATTCTCCTCGGACCA CGGGTACCAAGAACGTTTAGCTCATAATAAACCTGCGCAATTTTGTATCTCCCACTATGG GATCCTCCCTATAGTGAG |
| GenBank Accession | BX547377 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28884047 - go to primer design |
| BLAST e Value | 4e-89 |
| Hit Clone Code (BAC ID) | F7O12 |
| Hit Gene Code | At1g76900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tubby like protein 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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