SimpleSearch - Line and FST details


Line specific information

 
Line ID 540H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N451830)
Segregation Analysis 50:48:48
Confirmed for Hit At5g50120
Parent of DUPLO pair none
Parent of pair(s) 62182

Gene hit At5g50120

 
Sequence (A. th genome BLAST matches underlined) 
>16-K020532-022-540-H02-8409
TTCATTTACCTGCATGATGACCCATGATGTTGCTGGGGAGGTGATAGTCTCTGAAGGCAT
TGGAGTTTTATTTCTTTGTGACCCTTCCTGCGCTATCACCTGTTATTACATCGCCTCTGC
TTGATGCTTCGAATAATGATCCCAACTTCCTTTCATTCCCTCTTCATGCTTCCCCCCCGG
TGCAATCTATGTAACTACTCTTTCCTGCTCGACTTTGAAATTAAATGCTTGATGCTCCGT
ATCCTCTGAGACTGCCTTTATCTTCATCAACTATTCGACAAAAAAATGTTAGATAATCTT
CTTAAAAAAAATCTTATACTTCTATGAATTCTTCATTCTCTATCTTTATAGATTCT
GenBank Accession FR811869 [GenBank]
Graphic View Graphic view of gene At5g50120
Predicted Position of Insertion Chr5:20383317 - go to primer design
BLAST e Value 6e-05
Hit Clone Code (BAC ID) MPF21
Hit Gene Code At5g50120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g08080

 
Sequence (A. th genome BLAST matches underlined) 
>16-K020560-022-540-H02-8409
AGCCATTTACATTGAATATATCCTGCATGGACTCATCTTCTGTTTAGCTATGGGATCCTC
CCTATAGTGAGAGCNAAGGGAACCCCCCAAAAGGGAGAGCAAGGAAACCCCCCCACGAGA
AGAACCCCCCGAAAGAAAAAAGGAAACGGCAACCCCCCAAAAAAGGGAACACGCCACCCC
CCCAAAAAAAGGGACCCCC
GenBank Accession FR811870 [GenBank]
Graphic View Graphic view of gene At1g08080
Predicted Position of Insertion Chr1:2518132 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) T6D22
Hit Gene Code At1g08080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha carbonic anhydrase 7
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37