SimpleSearch - Line and FST details


Line specific information

 
Line ID 544A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N452135)
Segregation Analysis 50:50:47
Confirmed for Hit At1g12760
Parent of DUPLO pair none
Parent of pair(s) 88285, 88292, 88294

Gene hit F21P24

 
Sequence (A. th genome BLAST matches underlined) 
>49-K022081-022-544-A07-8409
AGCACTATGGGATCCTCCCTATAGTGAGACNNATCCCTTTTTTATATAGCTTAACTTATG
TTATTCGATTATTATTTTATTACTAATGTACATGTATATCAAGTTGTGACTGGAGTTTGT
GTAAACTATGTTGGAGATAAAAACAAGTATTAAAAACTGTTGAAATATATCTGTTCCTCA
TGCTTCATATATCAGTACCTGATTGTATTACTACACTTGAACTCCATCAGTCAAAACGTC
CCCAAAATATTCAAGGCAGAATATACATATAACAAACCATATGTTAATCTTATAAGAAAT
ACTAATACAGCTCACACCACTATCCTTCCGATAAAAAATAGACTAAATCACATAAACCTA
TACACCACAATTAATTCGACAATAAAATATA
GenBank Accession BX650184 [GenBank]
Graphic View Graphic view of sequence BX650184 of line 544A07
Predicted Position of Insertion Chr2:9803127 - go to primer design
BLAST e Value 9e-32
Hit Clone Code (BAC ID) F21P24
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g12760

 
Sequence (A. th genome BLAST matches underlined) 
>49-K020964-022-544-A07-8409
GNAGCCATTTACAATTGAATATATCCTGAGCACGAACAGAGGAAAGGGTGTCCACGGAGC
ATCCTCCCTTAGCTGTGTTCCATCTACCAATGCAGAGAGACAGATGCAACATTCCTGTAA
TGCAGAATCATAAGAACCAAGAAGCATAATTATCTATCTATGGGATCCTCCCTATAGTGA
GTCGTATTACTCACG
GenBank Accession BX572229 [GenBank]
Graphic View Graphic view of gene At1g12760
Predicted Position of Insertion Chr1:4350416 - go to primer design
BLAST e Value 2e-35
Hit Clone Code (BAC ID) T12C24
Hit Gene Code At1g12760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger, C3HC4 type (RING finger) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37