SimpleSearch - Line and FST details
Line specific information
Line ID | 544G08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N452208) |
Segregation Analysis | 50:49:29 |
Confirmed for Hit | At3g10740 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g32090
Sequence (A. th genome BLAST matches underlined) | >63-K020964-022-544-G08-8409 GTAGAATGATCATCCTCCTCATCATCAGAAAATGAGAATCACCAATAATATACACCGCAG GTAATAGTGGAGGTACATGATACACGCTCGTCTAATCGAGTGACAGTGAGTGGTACTTCA TCTCTCCAAAATCAAGTCTACAGTTGCGATTATCCTTCCTCACACAACGCTTCAACTTAC GAGCAGGCGTCGTCTCGTTATGAATATCACTACAGGACTCATCATTACAAGGAGCATGAG TACCGTTACAATTGATCTCTA |
GenBank Accession | BX572262 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:11540559 - go to primer design |
BLAST e Value | 2e-26 |
Hit Clone Code (BAC ID) | T12O21 |
Hit Gene Code | At1g32090 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | early-responsive to dehydration stress protein (ERD4) |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At3g10740
Sequence (A. th genome BLAST matches underlined) | >63-K022081-022-544-G08-8409 AATTGAATATATCCTGGAAAAAAAAAATGCTACTATGGGATCCTCCCTATAGTGAGGCAA TTGAATGATCCGGTTGTTTATGACGGTCAACATTTGGAAAAGATCGTTTCAAGGACTATG TCCCTGCAATCAACCAAAAAGATCTAGTATTTGATAAACTTCTTCTTCCAATATTTTCTC TATTAGCAATCTGTAATCTTCCATCTCAAGGCTCTACAGGGAATCAGAGAGAGCGAAAAA AGAACCTTGTGAGTATCCACTGGCATGGCCGAGACTTGGTCAATCCATATTGACCCTTTC TTGGTTGTTGTTAACTGAAGTCTTGCACTATGGGATCCTCCCTATAGTGAGATAGAACAA AAATATAAAATAAACATGATATTTACTATAAAAATTATCTATATACCATACCAACATAAT AAAAAACAATAGAAAATTTAAAATAAAACGAGTGCTCAATGAGTTATATTTATATATACT TATTTAAT |
GenBank Accession | BX650275 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:3363207 - go to primer design |
BLAST e Value | 1e-116 |
Hit Clone Code (BAC ID) | T7M13 |
Hit Gene Code | At3g10740 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | alpha-L-arabinofuranosidase 1 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |