SimpleSearch - Line and FST details


Line specific information

 
Line ID 545G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N452297)
Segregation Analysis 60:48:30
Confirmed for Hit At5g42170
Parent of DUPLO pair none
Parent of pair(s) 1117, 79412, 79583, 79618, 79705, 79729, 79735, 79748, 79749

Gene hit At5g42170

 
Sequence (A. th genome BLAST matches underlined) 
>90-K022310-022-545-B12-8409
GACAGTAATTCGGACAGAAGCCATTTACAATTGAATGTAGTCCATGGTGACCGTGGCATA
TGAAGTGTGCGATGCGGATGTACGCATAGAGAGGGATCACTACGGCATGGCGACCACAAG
ATAAAGAGGAATTTTCCCCAAGAAGTTAGCTTTCTCTTCGCCAACAATCACCTTTAATTT
ATTTTTATATTCTTGGAAATTTTTTAGTTGATCTGATAACGATACCACTTTCTGGAGCAT
CGCAGAACAAAAAAAAACATATCAATAAAAAGATGACTAAAAAATAAGAATCAAAACTCC
AATTTATTAAGAAAGTTTAAACGATATTAAAAATACCACTATGGGAGCCGCCCTAGAGTG
AGACC
GenBank Accession BX650321 [GenBank]
Graphic View Graphic view of gene At5g42170
Predicted Position of Insertion Chr5:16850454 - go to primer design
BLAST e Value 7e-60
Hit Clone Code (BAC ID) MJC20
Hit Gene Code At5g42170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SGNH hydrolase-type esterase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX572300 [GenBank] BX572300 [GenBank]

Gene hit At5g28335

 
Sequence (A. th genome BLAST matches underlined) 
>90-K022301-022-551-B12-8409
CCATTTACAATTGAATAATCCATTTTTCTTTGGTCCTGAATTTGCGTTGTTCAGTCGGAT
ATCTATGGGATCCTCCCTATAGTGAGCCTAAGGGATCCGGCATATACCGATTGTATGTGA
ATGGACATACGCTAAGGGAACGTGACTATAGTGAAAGGAGGGGATAGGGAGGATACTGAG
GGGAGGTGATCCTGCCGAGGGGGGGGGGGAGTAAAATCAAAGATAGATAG
GenBank Accession BX650599 [GenBank]
Graphic View Graphic view of gene At5g28335
Predicted Position of Insertion Chr5:10308835 - go to primer design
BLAST e Value 9e-06
Hit Clone Code (BAC ID) T8M17
Hit Gene Code At5g28335 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification TS2TE
Confirmation Status unknown


Last Updated on 10.06.2021 13:37