SimpleSearch - Line and FST details


Line specific information

 
Line ID 546G06
Vector Used pAC161
Line Availability available as T3 set from NASC (N452398)
Segregation Analysis 50:43:38
Confirmed for Hit At4g17410
Parent of DUPLO pair 2081
Parent of pair(s) none

Gene hit At2g35840

 
Sequence (A. th genome BLAST matches underlined) 
>47-K020585-022-546-G06-8409
TACCTGAAGCTTTAACTCAGGGAAGTCGCTATGGGATCCTCCCTATAGTGAGAGAATTAC
CCCCTTTTTTTCAATTAAAAAATGTAGATGTCCCCCCCGTTATTATAAA
GenBank Accession FR812004 [GenBank]
Graphic View Graphic view of gene At2g35840
Predicted Position of Insertion Chr2:15054423 - go to primer design
BLAST e Value 4e-06
Hit Clone Code (BAC ID) F11F19
Hit Gene Code At2g35840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Sucrose-6F-phosphate phosphohydrolase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g17410

 
Sequence (A. th genome BLAST matches underlined) 
>47-K021189-022-546-G06-8409
GTCCACAAAGACCTTTTTATGTAATCATTATCTACAATTCAGGTATTAGAGATCACATCA
TTGCAAAGTCAATGTGTGTTTGTGGAGCAACTCATGTCCTAGCTGATGATCTTCCACCTA
ACAAAACCCTAAGGGATACTATAAACCGGATATTGGAGTCAGGTAACAGTAGTGCTGAGA
ACGCTGGCAGCATGTGTCAAGTCCAAGGTATTTCATACTCTCATTCGCAGTCTTTTATAT
TTGTGTGTACCATCATTGATAAACTAATGAGTATTACATCTATGGGATCCTCCCTACAGT
GAGACCGCACAGCATAAAAAAAAACCAGATCAAAACCATAAGCACCACACAATACAGACC
AAAAACACAAGAACACTAAAATGAAAGTACATTTTGATAAACGACAAATTAAGAACCATC
CTATAT
GenBank Accession BX650534 [GenBank]
Graphic View Graphic view of gene At4g17410
Predicted Position of Insertion Chr4:9718402 - go to primer design
BLAST e Value 2e-143
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DWNN domain, a CCHC-type zinc finger
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX547651 [GenBank]


Last Updated on 10.06.2021 13:37