SimpleSearch - Line and FST details


Line specific information

 
Line ID 550E07
Vector Used pAC161
Line Availability available as T3 set from NASC (N452759)
Segregation Analysis 50:47:40
Confirmed for Hit At4g39290
Parent of DUPLO pair none
Parent of pair(s) 94936, 94938, 94939

Gene hit T14P1

 
Sequence (A. th genome BLAST matches underlined) 
>53-K020729-022-550-E07-8409
GTTGATGTGCAGTGGGGTTGGGTCCTTGTGGGGAGTCACTTTGTTTAGTAACAAACTAAA
AAAATACATTAGTATATGATTTCACATAACTCAAATATTTTGTTATAAATTAAATTGTTT
TTTCTCAATGTGATCAAAACCCTATGGGATCCTCCCTATAGTGAGACTATGGGATCCTCC
CTATAGTGAGCCTATGGGAACTTCCAAATATTGAGGAACCCTGAATTTGTAGATTTAAAA
ATAACTTAAATTGCAACGGGGTTGGGCCCTCGGGGGGAATTATTTGGGAAAGAAACAAAC
AAAAAAATCTCATTGGGAAATGTTTTTTCCGACCTGACAAATTTTGCGTCAAATTGGGGG
GTTTTTTGACAAAGTTCTCAAACGATGCCTTGATTTCCCCTTTCCAAAGAGGGACTATGG
GATCCTCCCTATAGTGAG
GenBank Accession BX572444 [GenBank]
Graphic View Graphic view of sequence BX572444 of line 550E07
Predicted Position of Insertion Chr2:18580917 - go to primer design
BLAST e Value 4e-61
Hit Clone Code (BAC ID) T14P1
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g39290

 
Sequence (A. th genome BLAST matches underlined) 
>53-K023855-022-550-E07-8409
GAAGCCATTTACAATTGAATATATCCTGATGTTCAATAACAACTTCTTCACACCAGATTA
GTTTCTTCTTAATAGTCACGCACTCCTCCCACAAAAGAACTATGTTTCCTCCATAATTCA
CCATTTTAACACCTTCACCACGAGGATTCATAATCGACCTGCGCACGAATCCTTTCAAAT
TTTTCCATATTTTTCTACATGAGTCATACCATTGGAGCATCTCGTAACTATAACGGTAGA
ACACGTTCTCTATCACACAATTAGAGAAATGAAATCCATGACTTAACGATAAGTGTGGCT
CTCTCCATCTACCTTTGTGTATCTCGTAAATCATGAAAGTTGCACGATTATTTTCTAATG
AACTTACGTGAGTAGCTTCATATAAACCCAAAGATTTTAGACTAAAAAAACACTGCATAC
AAACACAATTTAGGAGAAATAGAAAACAGTGAAGAAGAATGAAAAGACCAAAGAAGAAGA
AAGAAAAGAAACAGCAAACAAGGATATAAAAGTAAAAGAGATAAGAAATAGCAACAATAA
TAGATGAAAAAAGCAAATATGAAG
GenBank Accession BX891534 [GenBank]
Graphic View Graphic view of gene At4g39290
Predicted Position of Insertion Chr4:18285310 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T22F8
Hit Gene Code At4g39290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37