SimpleSearch - Line and FST details


Line specific information

 
Line ID 550F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N452765)
Segregation Analysis 50:19:18
Confirmed for Hit At1g09155
Parent of DUPLO pair none
Parent of pair(s) 18242, 72357

Gene hit At1g11860

 
Sequence (A. th genome BLAST matches underlined) 
>06-K020728-022-550-F01-8409
ATAGTGAGAGGAATCCCCTATAAAAGCTCCAGTGGCAAAGACTCATCATTTGTAAGATTT
CTACACAACCCATTTCAGTTTTTATGTTTTCTCTTCACAGATTATTTCGATTGCAGACAA
CATTTGTTTTCTTCTTCTTTCTGATAATACGATTTTCGATTCGATCTCATTGCGATTATT
AAGTTTTCTGATTGTTTCAGATGCTATATTATGAATCTTAATCTGATGGTTGAAGATTCC
TAGATTTAAAAATGCTATCTTTTTGCCAATAGAGCCTTTATGTGAATCTCCTTGCTTCAT
TCCGCAGGTTACCAGTTTATCGAATCC
GenBank Accession BX572447 [GenBank]
Graphic View Graphic view of gene At1g11860
Predicted Position of Insertion Chr1:4001360 - go to primer design
BLAST e Value 3e-145
Hit Clone Code (BAC ID) F12F1
Hit Gene Code At1g11860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glycine cleavage T-protein family
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At1g09155

 
Sequence (A. th genome BLAST matches underlined) 
>06-K023855-022-550-F01-8409
ATTCCGGGCTGACACAATCTCGTCGGCGGCTCGCCTCATCAGTTTTCCGAGTCGCCGGAG
ACTCTGACTTTGTGTGGTAGAAGTTTTCTCCTAGCGGTGACTGCCGCGCCATCTCTATGG
GATCCTCCCTATAGTGAGATACTTACATCACGTCTTGCGCTCTGCTTTGCATAATCTCAA
AATAGAGAAAGACGGGCATGATAACAATACCGTCCCCCTGGTTTCTTTAATCTTATCTAT
GGGAACATCCCTATAGTGAGGATAAAAACCCGCCACCGGCTTTTTTAAATATTAAATAGA
TATAGAAAGCATGTAAAACTACACATCTGAAGGAGACGTTTAATAAACATACACCTAGCT
CCTCTGCAGAAGCTTTTCGTAGCCAGAAGATACCCGTTTCATCTTCAAATTGTTCTGAGA
TTATGCGAACATATATACTCATATTCCTAAAATACTGACAGTTTGAGCTACCAAATTCAT
TGAAGCCCA
GenBank Accession FR812102 [GenBank]
Graphic View Graphic view of gene At1g09155
Predicted Position of Insertion Chr1:2950792 - go to primer design
BLAST e Value 7e-29
Hit Clone Code (BAC ID) T12M4
Hit Gene Code At1g09155 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phloem protein 2-B15
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37