SimpleSearch - Line and FST details


Line specific information

 
Line ID 554B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N453111)
Segregation Analysis 50:23:21
Confirmed for Hit At5g41250
Parent of DUPLO pair none
Parent of pair(s) 6858

Gene hit At5g41250

 
Sequence (A. th genome BLAST matches underlined) 
>82-K021826-022-554-B11-8409
CCACATAGTGGCAGACTATGAGAGTAATAGAGTGTAGTGTAGTCTGAAGATTTACAGAAG
TCCAGATCTATGGGATCCTCCCTATAGTGAGTCGTATGACGCACTGGTGCTACTCTGATT
TGGTAGCTCTCTGTAGTAGGTATGAGGTACTCGCTACTGGAATCCTCCCAACAGAGAGAA
AAATATATTTGTGATCTCAACTGGAGCTGGTTAAGGACCGGTTATGATTTGATTCGTGAA
GACTGAAGAAGGAGCATTTGGTCTAACCAGCCGGTTAAGAGAAGTCTATGGGATCCTCCC
TATAGTGAGAGAAAAAAAAAAAGGGGTTTTCCATTTTTTT
GenBank Accession BX650912 [GenBank]
Graphic View Graphic view of gene At5g41250
Predicted Position of Insertion Chr5:16501257 - go to primer design
BLAST e Value 4e-55
Hit Clone Code (BAC ID) MEE6
Hit Gene Code At5g41250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Exostosin family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX650912 [GenBank]

Gene hit T27E11

 
Sequence (A. th genome BLAST matches underlined) 
>82-K022078-022-554-B11-8409
ATGAAGCCATTTACAATTGAAAAAACTTCACTACACACTATGGGATCCTCCCTATAGTGA
GTCGTATTACTCATCCATTTGGGCGTGAATGTAGACACGGCTGCCTATGGGATCCTCCCT
ATAGTGAG
GenBank Accession FR812182 [GenBank]
Graphic View Graphic view of sequence FR812182 of line 554B11
Predicted Position of Insertion Chr4:13857043 - go to primer design
BLAST e Value 2e-04
Hit Clone Code (BAC ID) T27E11
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR812181 [GenBank]


Last Updated on 10.06.2021 13:37