SimpleSearch - Line and FST details


Line specific information

 
Line ID 554C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N453118)
Segregation Analysis 50:50:46
Confirmed for Hit At3g49690
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At3g27080

 
Sequence (A. th genome BLAST matches underlined) 
>43-K021826-022-554-C06-8409
GGAAGACTATTGCACACGCAAGATCGNTCAAAGAAATTTCTCACGAGTCTTTTTCCTATG
GGATCCTCCCTATAGTGAGTCGTATTACTCACGGGTTTACATGGAATTGGAGCCCCACTG
GCCTCCCCGCCATAGTGGGACCCTTGGATCCCCCCTCTTCGGGGTTGTGCTGAATACCGG
CTCCACAGGGGCACGCAGAATCTTACAAACAAGGCTTAGGCTCACAACCAATGGGTCGCG
TTGAAGCTCCAGCACCGCCGAGCTCAAAGGTTCTCTCTTTTTTATTTATGTTCATTCTCA
TCATCACATTTCATTTTCATTGCTTGATGTAATCGACTTGTAGATAATATAAGAAGATGT
GTTTGAACCTCATGATCATATTTTGATGTATTGTTCCAAACACAGGCAGTGAAGAATAAG
AAAAGTAGTGATGCCAAGTATGATGCTATGGGTTGGGTGATTC
GenBank Accession BX650929 [GenBank]
Graphic View Graphic view of gene At3g27080
Predicted Position of Insertion Chr3:9985719 - go to primer design
BLAST e Value 1e-156
Hit Clone Code (BAC ID) MOJ10
Hit Gene Code At3g27080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation translocase of outer membrane 20 kDa subunit 3
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 592B03

Gene hit At3g49690

 
Sequence (A. th genome BLAST matches underlined) 
>43-K021828-022-554-C06-8409
TAGATAAGGAAGACTATTGCACACGCAAGTCGTCAAAGAAATTTCTCACAAGTTTTTTCC
TATGGGATCCTCCCTATAGTGAGACGTAGGACTCCCCGGGTTATTGGGACTTGGGGACCC
TGTGGGTTCTGGGGGTTGGGGGGTGTTTGGAAAACTCCGGGTACCGGGATTATATGGGCT
CCGGGTTTTCTGGGCAGCATTGGGATAATATTTCCCCTAGATAGTTGTACACAACATCAT
ACCCGCCAACATATATAATCTTGATCATAGAGAGATAAGCAGAGGCCGCTATCATGAACA
AGAGCTAGGAACAAGACTTCACTATGGGATCCTCCGTATAGTGAGANNNACNNATGGGAT
CCTCCCTANAGTGAG
GenBank Accession BX650930 [GenBank]
Graphic View Graphic view of gene At3g49690
Predicted Position of Insertion Chr3:18427636 - go to primer design
BLAST e Value 4e-40
Hit Clone Code (BAC ID) T9C5
Hit Gene Code At3g49690 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 84
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX650930 [GenBank]


Last Updated on 10.06.2021 13:37