SimpleSearch - Line and FST details


Line specific information

 
Line ID 554C10
Vector Used pAC161
Line Availability available as T3 set from NASC (N453122)
Segregation Analysis 50:42:32
Confirmed for Hit At4g33900
Parent of DUPLO pair none
Parent of pair(s) 9534, 63924, 94936

Gene hit At4g33900

 
Sequence (A. th genome BLAST matches underlined) 
>75-K021826-022-554-C10-8409
AGCCATTTACATTGAAAGCGAAATTTTTTGGAGACTAATGAGAGAGTTGGATAATGTAAT
CTTGAGACGCGAGCTAAGCAGTTAAATACCAAATCATCAGGAAGCATTAGAAATCTTTTA
ATCGAGGGTTCTTCTCCATATTCCATGGTTGTTGATCACTTTTTTTCTCTTACGGTTGTT
GATAGAGAGCGGAAGCTAAATATCGGACGAGAACACAAGATCTCTATGGGATCCTCCCTA
TAGTGAGACCTATTACTCCCCCCCTTACACGGAATTGGTAACTCCCTGTGATACTCGCAA
TAGTGAGCTATATAAGATACTCCCCATATTGAGATCTATGAAATACTCAGCTTCAGGAAA
TTGAAAACTCACTAAGAGCCGCGAACTAGTGAGAGATAAAGAGAA
GenBank Accession BX650943 [GenBank]
Graphic View Graphic view of gene At4g33900
Predicted Position of Insertion Chr4:16252579 - go to primer design
BLAST e Value 1e-104
Hit Clone Code (BAC ID) F17I5
Hit Gene Code At4g33900 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g55100

 
Sequence (A. th genome BLAST matches underlined) 
>75-K022078-022-554-C10-8409
ATAGGCTTATATCTAAACCTTAAACCCTAATCTTTTGTTTTGCTAACACTATGGGATCCT
CCCTATAGTGAGAAGGAACCCAAATGTATGGTTGTCCCCTTGTTTGACTCTCAAGACAAT
TTCACATTGCCCGCGCGTGTTTGCTTACAAAACTTGAAGTCCTATGGGATCCTCCCTATA
GTGAGATNNNNNNNNNNNNNNNGNANNGGNNNNANNNNNNANNAAAANNGGTAAGNGAAG
ANAAGGGGAAAAAAAAAAAACATAAATGACCTCACTATAGTGACAAAGGATGAATTAACA
ATACAATGATGACCGCAGCTAAGGGCGGTGGGAATAAAAAGCACGGGAGGGGATGAGGGC
ATAAATAACTAAGGTGGGATACACTCATCGTGGACGATATGCAATACTTGGAAACCAAAA
ACAACGTGGGACCAGAA
GenBank Accession BX650945 [GenBank]
Graphic View Graphic view of gene At5g55100
Predicted Position of Insertion Chr5:22363395 - go to primer design
BLAST e Value 5e-30
Hit Clone Code (BAC ID) MCO15
Hit Gene Code At5g55100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37