SimpleSearch - Line and FST details


Line specific information

 
Line ID 554E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N453142)
Segregation Analysis 50:41:30
Confirmed for Hit At5g52390
Parent of DUPLO pair 1359
Parent of pair(s) none

Gene hit At1g05620

 
Sequence (A. th genome BLAST matches underlined) 
>45-K022078-022-554-E06-8409
NTTTAGCTTAATTCCGGACATGAAGCCATTTAAATTGTTTATATCCTGCCACCTAATTGG
TAGCTCGAGCCAGAATAGACCTCTGAAACACCCTTACAAGCCCATACCTGAGCCTTGTAC
CCTAATCTTTTGTTTTGCTAACACTAGTCCATCCACCCTATACTGAGTATAGTGAGACNA
NGGGATCCTCCCTATAGTGAG
GenBank Accession FR812197 [GenBank]
Graphic View Graphic view of gene At1g05620
Predicted Position of Insertion Chr1:1678637 - go to primer design
BLAST e Value 2e-07
Hit Clone Code (BAC ID) F3F20
Hit Gene Code At1g05620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation uridine-ribohydrolase 2
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At5g52390

 
Sequence (A. th genome BLAST matches underlined) 
>45-K022312-022-554-E06-8409
AGTCTAGAAGAACACTGTCGGAAGTAAGGAGCTCGGGAGGTGCAAGGGCCACTCTTGCAC
CGATAGAAACAAACATGTAGGGAGAAGATAAACTTGAGCCTTCTACTTCAATGAACAAAG
TACCTTATTACAACGCTATATCCATACATATATAATGATTATAAGAATTAACGCGGAACG
AACAGAGAAGAGAGCGTTATGGAAATAAAATAAGTACATCGTAGAAGAAGCCAATAAGTA
ACATGATAACGCAGGTACAAAAACAAGCAAGTGAGTACAAAAACAATGCGGGGTCAATGA
AACAAACACTACACAGAAGACAAAACACTCAGAAGACCTAATCCCCCTCAAAACTGACCA
TTAGTGAAATGCAACATACACACAGCTTCAATATACAATTATAAA
GenBank Accession BX650994 [GenBank]
Graphic View Graphic view of gene At5g52390
Predicted Position of Insertion Chr5:21264576 - go to primer design
BLAST e Value 2e-05
Hit Clone Code (BAC ID) K24M7
Hit Gene Code At5g52390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PAR1 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37