SimpleSearch - Line and FST details


Line specific information

 
Line ID 556B08
Vector Used pAC161
Line Availability available as T3 set from NASC (N453300)
Segregation Analysis 50:22:16
Confirmed for Hit At4g22560
Parent of DUPLO pair none
Parent of pair(s) 2713, 63461

Gene hit At4g22560

 
Sequence (A. th genome BLAST matches underlined) 
>58-K025925-022-556-B08-8409
TGCTAACCCTCCCTAAAGGGAGCCTCCCTGATCCGAGACCCCGAAGATGCTCCCTGCTGT
GGATCTGATCATTGGAATGCAAATCCAAAGCGTTCGATGATGTCAACTATTTCTCCCGTC
ATGCGGGGGGGGCGGCGTCGAGTTACACTTGTATTCGAAAGAGCTCACATTGCGTCTTAG
ACGTGATCGATACCCGGTTACGCACGAAAAACCGGAACCCCGACCCGAATCTAAGGCGTT
TCCCGTCTTGTCGAACCGAAACAGAGTTCCTTAACCCGCCTAACCGGACCCGACGAAGCA
AATCTGCCCGAACATCAGACGCGCTGACCGAGCTGCCCGAGGGGGGCGCGTCAGGAAACG
TAGTGGA
GenBank Accession CR397925 [GenBank]
Graphic View Graphic view of gene At4g22560
Predicted Position of Insertion Chr4:11880075 - go to primer design
BLAST e Value 1e-83
Hit Clone Code (BAC ID) F7K2
Hit Gene Code At4g22560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sulfated surface-like glycoprotein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX651230 [GenBank]

Gene hit At2g22200

 
Sequence (A. th genome BLAST matches underlined) 
>58-K021707-022-556-B08-8409
ATTGAATATGACCAGACCAATAGGAAATTGCCATGTCTACATGTGCTTTGGATCTATGGG
ATCCTCCCTATAGAGACCCTATTGATCTCCCCCCCAAAAATAAATTTCTATTTTTCTTCT
TAATAATTCTTTTCTTTTCATAAACTATAACTCTTTATACCTTTTTTAATATATTTAAAT
TATATTTATTATTTTTTAAATAAATTAATTATTAAATATTTATTTTATTTAAAAAATATC
TATTTTCTTTAAATATATTATATAATATATTCTCCTTTTTTTTTATACATTATTCTAATA
TCATTTCTATAAATATACTACTTTCTATTATATTCTTTATATTTAATTAATATCTTTAAA
CTACTCTAATTCCTAAATCATTCCCTCAATCCACTACCTAAATCTATATATCTCTTAATA
CATCCTCATTCCTCTCACAAATTTCCCACTTTCCATCCCCCACCAT
GenBank Accession BX651229 [GenBank]
Graphic View Graphic view of gene At2g22200
Predicted Position of Insertion Chr2:9444520 - go to primer design
BLAST e Value 2e-14
Hit Clone Code (BAC ID) T26C19
Hit Gene Code At2g22200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Integrase-type DNA-binding superfamily protein
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37