SimpleSearch - Line and FST details


Line specific information

 
Line ID 556H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N453365)
Segregation Analysis 50:22:8
Confirmed for Hit At4g23210
Parent of DUPLO pair none
Parent of pair(s) 10279, 10289, 10292, 10310, 10313, 10323, 10352, 24185, 75345, 75350, 75356, 75360, 75392, 75435, 75461, 75464, 75474, 75477, 75480

Gene hit At4g23170

 
Sequence (A. th genome BLAST matches underlined) 
>08-K025925-022-556-H01-8409
AAATATGAAATGGCTACATCATTTATAGTCTGAGAAGATATCGTTATCCTCCCTACAATC
CGTATCTCTTTGATTGTAAGAAACTGAGTTACTTTATTGCGATGATACCAATTTTAAACG
CAAAGAAAAAGCAACACGTCAATTTGTAAAGCAGAGCAAAACGAATTACAACTTGGCCAA
AACTTCGACGTAAAAAGCAGCACATCAATTTGCTCTGCTTGGCGACGGTGGTGGTGGTGN
ANATGNNNNNNNNTGANANNNNNTAAATAATAAAAAAAATTAAAGGATTATAATTGAAAA
ATTAAAG
GenBank Accession CR397983 [GenBank]
Graphic View Graphic view of gene At4g23170
Predicted Position of Insertion Chr4:12136284 - go to primer design
BLAST e Value 3e-93
Hit Clone Code (BAC ID) F21P8
Hit Gene Code At4g23170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation receptor-like protein kinase-related family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At4g23210

 
Sequence (A. th genome BLAST matches underlined) 
>08-K025924-022-556-H01-8409
CATTGACAAAATAAACACTGATAGTTCAAACCTTGAGGCGGGAAACTACAATCTGATCCC
CGGGTATGGGATCCTCCCTATAATGAGACCTTTTAGTTCTTTGGACAGAGTCTTGTGACT
GAAACTTTAAGTCTTAAGTTTGCAAGGACTTACTATTGTCTCTCTTCTTGTCCCGGTTGT
CTGCAGAAGGTGGTTGTGACCCAACCCCAGGACTTTGCATTGGAGGAGGAAAAAGAGGAG
GATTATTACCCAAGGTAATGTTATGAAAAGCCTTAGAGAATGTAAAAAGCTGCCACCGGA
AAAAGCAGATTGGCCGCATAACATAGCCTCCAGTATTATTTCCACAGCATGACTGGTATG
GGATCCTCCCTATAGTGAG
GenBank Accession CR397982 [GenBank]
Graphic View Graphic view of gene At4g23210
Predicted Position of Insertion Chr4:12150404 - go to primer design
BLAST e Value 6e-122
Hit Clone Code (BAC ID) F21P8
Hit Gene Code At4g23210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cysteine-rich RLK (RECEPTOR-like protein kinase) 13
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37