SimpleSearch - Line and FST details
Line specific information
| Line ID | 562E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N453909) |
| Segregation Analysis | 50:40:26 |
| Confirmed for Hit | At5g16410 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 59647, 92870 |
Gene hit At5g16410
| Sequence (A. th genome BLAST matches underlined) | >37-K021664-022-562-E05-8409 AATTAAATTGAAGATTAACTCTAGGTATACCAGTATCCCTCCAGGAGGATCCTCCGTATA GAGAGAACCAGCTCTGCTCCCGGGTGGGAGATGGTACGATCCAAAAACAGGCGAGCCCCA CCCGAAATCAATCCGGGCCACTGGAAAACTCTTTCCAGACGAAACAACGAAAGCGGGTCC ATCGTTGGATCCTGTACTGGAGATCCTTGATATAACTGGTATCGGACGGCTATGGGATCC TCCCTATAGTGAG |
| GenBank Accession | BX651664 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5365800 - go to primer design |
| BLAST e Value | 2e-87 |
| Hit Clone Code (BAC ID) | MQK4 |
| Hit Gene Code | At5g16410 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HXXXD-type acyl-transferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g08035
| Sequence (A. th genome BLAST matches underlined) | >37-K021689-022-562-E05-8409 ATTGAATATATCCTGATATTTCCCGGGCATTAATCCTATGGTTTTATAGAAGGTTTAAGA TATTAATACCATTGGGCCTGATAATTAAATGGGCCTATGGGATCCTCCCTATAGTGAGAC CTATTACTCCTTGTCTTTTTCCGATTTTGTNATTCCCTGGATTCTTATTTTCCTTTTATA CTAATAATAAGGGGGGGTTCCTATCTTTAGTGGAATCAATTTATTTGGTATATTTTTGTT ATTGTATTAATTGAGAAATTAATTGATTTGCGGTATTCTTATTTTGGGGGATTTTGTTTA TTTTGGGATTGGTGGGTTTTAGGAGATTCTTGCAAATTGAAGAAATAGGAACANCATTAC AAAGAACCCATTTCGTTTTNACAAGTGCCCCGAAAATATGCTGGGGGCGGGGGCCCNACC TACCNAAGTCCNNCCCCCGTTAACCGACCCAACCCCACGACACCCTGAATATAAATGTAC TCCCAAT |
| GenBank Accession | BX651665 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2494285 - go to primer design |
| BLAST e Value | 2e-23 |
| Hit Clone Code (BAC ID) | T6D22 |
| Hit Gene Code | At1g08035 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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