SimpleSearch - Line and FST details


Line specific information

 
Line ID 564B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N454072)
Segregation Analysis 50:50:44
Confirmed for Hit At3g25160
Parent of DUPLO pair none
Parent of pair(s) 8108, 9061, 66864, 96344

Gene hit At5g35590

 
Sequence (A. th genome BLAST matches underlined) 
>90-K023154-022-564-B12-8409
CTTCACAATTGAATATATCCCGCAAGTCGCTCCCCCCTGTATCACAGATGCTTGTCCCTA
TAGGCCAGAAGACTCATGTGTACCCTGTATGAAACCCTGTATATAGATCAATAACCTGTT
AGTGTGTTGANTCCTCCTGAGGGACCCTCCCCACACTCAGGGGGGCGGCCCGGGGATGGC
CCCCTAACTNCAGGGGGGGGGGGGGCCCCACTCCCCCCCATCCAAACACCCCTCCGGCCC
TCCCTATGGAACGCCCCCTTGAAACCCCCCCGACCGCCCCCCCCTCGTCCCCCCCC
GenBank Accession FR812363 [GenBank]
Graphic View Graphic view of gene At5g35590
Predicted Position of Insertion Chr5:13766015 - go to primer design
BLAST e Value 6e-05
Hit Clone Code (BAC ID) K2K18
Hit Gene Code At5g35590 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation proteasome alpha subunit A1
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g25160

 
Sequence (A. th genome BLAST matches underlined) 
>90-K021119-022-564-B12-8409
AACCCCTAGTCTATGAGACAAAACCAAAATGAGCTTATAAAGTTCCACACAACATTGATA
CAATATAAACATAAATGCTCACTATGGGATCCTCCCTATAGTGAGACTATGGGAGCCTCC
CTAT
GenBank Accession BX651876 [GenBank]
Graphic View Graphic view of gene At3g25160
Predicted Position of Insertion Chr3:9161486 - go to primer design
BLAST e Value 2e-32
Hit Clone Code (BAC ID) MJL12
Hit Gene Code At3g25160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ER lumen protein retaining receptor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37