SimpleSearch - Line and FST details


Line specific information

 
Line ID 566B03
Vector Used pGABI1
Line Availability available as T3 set from NASC (N454255)
Segregation Analysis 50:38:25
Confirmed for Hit At2g27310
Parent of DUPLO pair none
Parent of pair(s) 467, 5920, 5935, 5958, 5965, 5968, 5972, 5986, 5996, 8789, 78507, 78563, 78591, 78675, 78677, 78679
Note

Gene hit At2g27310

 
Sequence (A. th genome BLAST matches underlined) 
>18-K021097-022-566-B03-8409
ACCCACGCTTCATAGTCCCCACCCGTTATATCGAATCCGGGTTTGGACCGACTCTTTCGG
GTCGAGTATATCGACCCGAAACGGTGATGACAAGAACCATCCTGATTTACCTTTCTCTGT
TTCCATCTCTTGTATGGGATCCTCCCTATAGTGAGANNNNNNNGNNTCNNNGNNNAANAG
GANTTTGNNAATGTTTATTATGTGTTTTTAAAATTTG
GenBank Accession BX652047 [GenBank]
Graphic View Graphic view of gene At2g27310
Predicted Position of Insertion Chr2:11684468 - go to primer design
BLAST e Value 2e-60
Hit Clone Code (BAC ID) F12K2
Hit Gene Code At2g27310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g03160

 
Sequence (A. th genome BLAST matches underlined) 
>18-K021115-022-566-B03-8409
AAACTTTCGTAGCCAACTCTTAGTATGGGATCCTCCCTATAGTGAGATGANGAGGAAACC
NGCGGGTACCGTAAGTCGACCGCGAGCGGGGATGACTAGAGACAGCCTGATTTCCCTTTC
TGGGTTTGCATGGCTCGCATGGGAGCCTAAGTATTGGAGTACCCGCGTCTTCTTCGCGAG
TGAGTGGTTGCTTGCCAACTTCTTCTGCTCCTACCTCTCGTTTCCGC
GenBank Accession BX652048 [GenBank]
Graphic View Graphic view of gene At5g03160
Predicted Position of Insertion Chr5:750200 - go to primer design
BLAST e Value 4e-09
Hit Clone Code (BAC ID) F15A17
Hit Gene Code At5g03160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DnaJ P58IPK-like protein
Insertion Classification TS2TE (5')
Confirmation Status failed, line belongs to a contamination group, please check line 552G05


Last Updated on 10.06.2021 13:37