SimpleSearch - Line and FST details


Line specific information

 
Line ID 567F06
Vector Used pGABI1
Line Availability available as T3 set from NASC (N454402)
Segregation Analysis 50:36:33
Confirmed for Hit At4g11030
Parent of DUPLO pair none
Parent of pair(s) 84662, 84664, 84666, 84668

Gene hit F15A23

 
Sequence (A. th genome BLAST matches underlined) 
>46-K021149-022-567-F06-8409
ATTTTCTAATTTACGAAACTGAAGTTAACATTTGGGTTTGTTCAATTTTCGCCGAATCTC
TTTTTTGTTCTAGCATTTCTAGGTTTTTCGGTTAAAAACGAAACAAGTAAAATAGATTGA
TATTTGGGATTTTGAAGGAGTGTTGGAAATTGTTATATAATTTTGATAGATTTATGTTTT
AAAGTTTGATATTTGGGTTTCAAAAACCTTCAAAGAAGATTTCAAATGCCGATTAACTTC
TCTGTTGTAACAATTTTAAAGTTTTTTTCGTTTTGAAACTTCAACAGTAAATAGATTGAT
GTTTGGGTTTGTGTTTTAATTTATAGATCCTCACTTAATTTATGGGTTACCAGTTGATTG
GAGTTGGTTTGGAAAAGTTTTTTTTGTTTCTATTTTCAGCGGCTGTGTTCTTTGAAAAAG
ATTAAAATTTTGTTTTTGGAATGGTTTCAAAACGGTCTTTAAAAAGGATTATGGAGTAAT
GACTGTGTTTTACAAGGGTTTTTAAAGTCTTAAAACGACTTGCAAT
GenBank Accession BX652237 [GenBank]
Graphic View Graphic view of sequence BX652237 of line 567F06
Predicted Position of Insertion Chr2:6598609 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F15A23
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g11030

Sequence (A. th genome BLAST matches underlined) 
>46-K021133-022-567-F06-8409
CATTTTGTGTGCTCACATACGCTTTTGATTTAGAGTGTAGCATGCATTATCATTTTGAAA
CATGTTAATATGATAAACGTATATCGATCAGGGATCTTGGGAATTTTATTTCATGTTTTG
TATGGGATCCTCCCTATAGTGAGANNNNNNGNNCCCCCCCCT
GenBank Accession BX652236 [GenBank]
Graphic View Graphic view of gene At4g11030
Predicted Position of Insertion Chr4:6738357 - go to primer design
BLAST e Value 1e-55
Hit Clone Code (BAC ID) F25I24
Hit Gene Code At4g11030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation AMP-dependent synthetase and ligase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details