SimpleSearch - Line and FST details


Line specific information

 
Line ID 570B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N454640)
Segregation Analysis 50:42:31
Confirmed for Hit At1g48540
Parent of DUPLO pair 11805
Parent of pair(s) none

Gene hit At1g48540

 
Sequence (A. th genome BLAST matches underlined) 
>26-K021262-022-570-B04-8409
CCGCTCTGAATTCTTATGGGATCCTCCCTATAGTGAGACATGTTAATGCCCCTCTGGATA
ATATTCAGGTGGACTTGTTTGAGAAAGAAATATGTGTATGGTTTGAAGCTAATAATATTC
CATTACTTTGGTTCACCATTTTCATAGCACCTCTCGTGAATGTATATTCTCTCTTTGCCT
ATGTTTTTTCATCTTAGGATCCCTATAGTGCGACGTGACGATATTCACGTCCAATCGGGG
GCTTAGATGAGTTAAATCACCATCTTTGCCTTGACTTCCCCATTGCAAATAAACGTACTT
CTTGATAAAAGGAGTATTTAATATCCGTCGTATTTATAGGCGAAAGCATTAATCCAATTA
TTTTAATTCGCAA
GenBank Accession FR812457 [GenBank]
Graphic View Graphic view of gene At1g48540
Predicted Position of Insertion Chr1:17949415 - go to primer design
BLAST e Value 7e-32
Hit Clone Code (BAC ID) T1N15
Hit Gene Code At1g48540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Outer arm dynein light chain 1 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g08390

 
Sequence (A. th genome BLAST matches underlined) 
>26-K021195-022-570-B04-8409
CATTACCTAACTCTTTAAGTGAAATTGAAACTTTACTGATTCTATGGGATCCTCCCTATA
GTGAGACCGAGGGATCCCCCCCATAGTGGGGATGGGTGAATCCCCCCCGCCCAAGGCCAT
TAGACTATGATCCGAAATTGAAGATCTTTGGGAACCGCCCTATAGTGAGCCACGCGTCTG
ACAGACGGCGAAAGCTTCAGGCGAATTATTCTAGTTCGGAAATCTTTATTTCGACGTGTC
TACATTCACGTCCAAATGGGGGCTTAGATGACAAACTTCACGATCGATGCCTTGATTTCG
CCATTCCCAGATACCCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATATACACT
CATATACATAAATACTGACAGTTTGAGCTACCAATTCGGTGTACCCCA
GenBank Accession FR812456 [GenBank]
Graphic View Graphic view of gene At4g08390
Predicted Position of Insertion Chr4:5314755 - go to primer design
BLAST e Value 6e-05
Hit Clone Code (BAC ID) T28D5
Hit Gene Code At4g08390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation stromal ascorbate peroxidase
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37