SimpleSearch - Line and FST details
Line specific information
| Line ID | 572C12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N454852) |
| Segregation Analysis | 50:48:46 |
| Confirmed for Hit | At1g80000 |
| Parent of DUPLO pair | 2354 |
| Parent of pair(s) | none |
Gene hit At1g80000
| Sequence (A. th genome BLAST matches underlined) | >91-K021193-022-572-C12-8409 CATCATCTGTGGGAAACTCGCGTAAAATCAGGCGTTTTCGCCGATTTGCGAGGCCGGTAC TCTTACCCAAATATCAAATTATATGCGTTACTATACGCTCATACTCAGAGAGGATTGACT TGGTTACCTGACTGCCCAAACAGGAAAGTGAGTCTGTTTAATGAAAACTACATGTTTCTG GGTGTACATACTCGAAAATTTACTCATCTACACACTTAAGACATGTATATCTAACCAGTA ACATCCATTTTGCAGGGGGCCTATGGGATCCTCCCTATAGTGAGTGATGGAAATTATTGC AATCACTATCTATCTAGACCTAAAATCAAATATATGAAATCCTCTTTAGATTGAGCAAAA ATGAAAGTACCTTTTGATAGAACGACGAATTACGATCCGTCGTATTTATAGGCGAAAGCA ATTTACTTCTTAATCTAATTCGGAACTCTTTATTGCGACGTGACTACATTCACTTCCAAA TGGGGGCTTAGATGAGT |
| GenBank Accession | BX652721 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:30096325 - go to primer design |
| BLAST e Value | 4e-46 |
| Hit Clone Code (BAC ID) | F19K16 |
| Hit Gene Code | At1g80000 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CASC3/Barentsz eIF4AIII binding protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T1M15
| Sequence (A. th genome BLAST matches underlined) | >91-K021191-022-572-C12-8409 CCTGGATTTTGGCTTCCAGGACTTAGAACTTTTCTTGAACTAAGTATTGTTGCTTATAGT TGTACATACCAAGGGTGTGTCAAATGCTCAACACATGACCGAGACCCTTTTTTCACCCCA ATTCCCATATCTGGGATCTACTCGTCCTTTCTTATAAAAAGAGAGTCATTTGTAAAGACA TCCCGGTGATTTCTACTTACACGCCAGAACCTTTCAATCTACCACACTATCTTATTCCAT CCTCCCAATTCCGAATCATCTAAAAAACCTGATAGATCAAAAACAAGTACGACATTATTT GATGGAAATTATTGCAATCACTAGCTATGGGATCCTCCCTATAGTGAGACTATGGGATCC TCCCTATAGCGAAGAAATAGGATCCTCCCTATCGAAGGGGGAAGTGCAATGCAAATCTAT TTTTAAA |
| GenBank Accession | BX652720 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7014334 - go to primer design |
| BLAST e Value | 3e-34 |
| Hit Clone Code (BAC ID) | T1M15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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