SimpleSearch - Line and FST details


Line specific information

 
Line ID 577A04
Vector Used pAC161
Line Availability available as T3 set from NASC (N455300)
Segregation Analysis 53:52:45
Confirmed for Hit At5g63970
Parent of DUPLO pair none
Parent of pair(s) 6697, 6707, 6709, 6746, 10735, 72903, 72940, 72973, 73003, 73035, 73062, 73091, 73121, 73146, 73174, 73175, 73176, 73178, 73179, 73180, 73183, 73185, 73186, 73187, 73188, 73189, 73190, 73191, 73193, 73194, 73195, 73196, 73197, 73198, 73199, 97444

Gene hit At5g63970

 
Sequence (A. th genome BLAST matches underlined) 
>25-K021317-022-577-A04-8409
TTGGCCGGTAAACCACAATCCAAGCTGATACATCCTGCCAAGTTACTTATAAACCCTTGA
CAACTGTAGGGTGGAGTTTTTTATCGTATTCGATATTGCATTCCCATATGGATTCAGTCG
TTTACCACCGCCATGAAAGCATTTTCTATTGAATGAATATCTCCCATGCGAGAAAATGTC
TTATCATTAACCAAAACCATTGAATCTTTTCGTATGCATGCGTACCATTTTTAACCTCCT
CAAATAAATACCTGTCCACTCATTGCTCTTGGTAAAGTCAATTCCTATGGGATCCTCCCT
ATAGTGAGACNTNNTN
GenBank Accession BX653178 [GenBank]
Graphic View Graphic view of gene At5g63970
Predicted Position of Insertion Chr5:25608441 - go to primer design
BLAST e Value 1e-39
Hit Clone Code (BAC ID) MBM17
Hit Gene Code At5g63970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Copine (Calcium-dependent phospholipid-binding protein) family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g29000

 
Sequence (A. th genome BLAST matches underlined) 
>25-K021302-022-577-A04-8409
CCTTATATTTTCTTAAGATATTTTACTGACAGAGTCTACATTGCTATGATTTATTTGTAA
AGCCGGGTACTAGTTATCTGATCCGACCTATGGGATCCTCCCTATAGTGAGAGGGTTCCC
CTCGGGAGTGCTTGGCATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGA
AAGCCTGACGACGGAGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGG
GATCCTCCCTATAGTGAG
GenBank Accession FR812588 [GenBank]
Graphic View Graphic view of gene At2g29000
Predicted Position of Insertion Chr2:12461304 - go to primer design
BLAST e Value 9e-10
Hit Clone Code (BAC ID) T9I4
Hit Gene Code At2g29000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37