SimpleSearch - Line and FST details


Line specific information

 
Line ID 579E09
Vector Used pGABI1
Line Availability available as T3 set from NASC (N455545)
Segregation Analysis 50:43:34
Confirmed for Hit At3g01090
Parent of DUPLO pair none
Parent of pair(s) 67834, 96802

Gene hit At5g23020

 
Sequence (A. th genome BLAST matches underlined) 
>69-K021289-022-579-E09-8409
TTTGAATTGTATCCACTCTGGACGCACAGTATCTACTGGATTTGCAGAGGGTATGGGATC
CTCCCTATATTGAGACGCAACCATGAACATCTTCTCCGGACGTCATGCTGTACAACACCG
GCTTAAACAGGTATGGGATCCTCCCTATAGTGAGATATTCCTTTTTTTTTTTTTTCTTTA
TGACCCCAAAAGTTTTTGGGGAAACCCTCCCCTTTTTTTTTTTTTTCTTTTTTTTTAATT
TTTAATAGGCGGCCCCCACAAAAAACCTTTTTTTACTTAAGGTTAAAACGGACCAAATTT
TAAAAAAAAACATTTTTGTGGGGTCCCCCCCCTTAAGGGAGACTACGTCCCCCTCACACC
CATCTTTAATTCTCTTCCCCTCCTTCATCGCTTCTCTTATTTGACTGGATTTCTAATCCC
TTTTCTATCCTCACCTACCTCCTCTCCGTCTGGCTACCCCCTAATAATCCTTTTCATCCT
C
GenBank Accession BX653394 [GenBank]
Graphic View Graphic view of gene At5g23020
Predicted Position of Insertion Chr5:7721025 - go to primer design
BLAST e Value 5e-05
Hit Clone Code (BAC ID) MYJ24
Hit Gene Code At5g23020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-isopropylmalate synthase 2
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g01090

Sequence (A. th genome BLAST matches underlined) 
>69-K021325-022-579-E09-8409
ATTGTATAAAACTCCGGACCACCGTATCTACTGGATTTGCCGAGAGTATGGGATCCTCCC
TATAGTGAG
GenBank Accession BX653395 [GenBank]
Graphic View Graphic view of gene At3g01090
Predicted Position of Insertion Chr3:31550 - go to primer design
BLAST e Value 2e-04
Hit Clone Code (BAC ID) T4P13
Hit Gene Code At3g01090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SNF1 kinase homolog 10
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details