SimpleSearch - Line and FST details
Line specific information
| Line ID | 579F06 |
| Vector Used | pGABI1 |
| Line Availability | available as T3 set from NASC (N455554) |
| Segregation Analysis | 50:44:41 |
| Confirmed for Hit | At5g05470 |
| Parent of DUPLO pair | 7898 |
| Parent of pair(s) | none |
Gene hit At5g05470
| Sequence (A. th genome BLAST matches underlined) | >46-K021289-022-579-F06-8409 AGCAAGAAAACAATGATAAATTACTAACTGTGAAAGACTACGAATATGAAACTAATTGTA TTTAGATATACATTATACATACCTATAACTAACCTGGCATGGGATCCTCCCTATAGAGAG AGAAGACTTATAACATATCTTCTGTATGGGATCCTCCCTATAGTGAGAGGGGGTTAGATT CTTCCTATGCTGAAAGGAGAATGATTATTGGAGGGACTAGTCCCAACAGACGCTTAATGA GTGTGCGGATACTACTATGAGATGGATTCACGCTAGATTAGTAAGTCACAACTCTTTCAG ACAGTGAGATGTTCTTAAAAGGAAAATTTCTTGGATATGCTCCAGTGTAAATTTCAGAGC ACAAACAAAATGATTTAGTTGGCTGATCTCTTTTGTGTGTATGGGATCCTCCCTATAGTG AG |
| GenBank Accession | BX653406 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1621253 - go to primer design |
| BLAST e Value | 5e-05 |
| Hit Clone Code (BAC ID) | K18I23 |
| Hit Gene Code | At5g05470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | eukaryotic translation initiation factor 2 alpha subunit |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g05210
| Sequence (A. th genome BLAST matches underlined) | >46-K021289-022-579-F06-8409 AGCAAGAAAACAATGATAAATTACTAACTGTGAAAGACTACGAATATGAAACTAATTGTA TTTAGATATACATTATACATACCTATAACTAACCTGGCATGGGATCCTCCCTATAGAGAG AGAAGACTTATAACATATCTTCTGTATGGGATCCTCCCTATAGTGAGAGGGGGTTAGATT CTTCCTATGCTGAAAGGAGAATGATTATTGGAGGGACTAGTCCCAACAGACGCTTAATGA GTGTGCGGATACTACTATGAGATGGATTCACGCTAGATTAGTAAGTCACAACTCTTTCAG ACAGTGAGATGTTCTTAAAAGGAAAATTTCTTGGATATGCTCCAGTGTAAATTTCAGAGC ACAAACAAAATGATTTAGTTGGCTGATCTCTTTTGTGTGTATGGGATCCTCCCTATAGTG AG |
| GenBank Accession | BX653406 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1548144 - go to primer design |
| BLAST e Value | 4e-12 |
| Hit Clone Code (BAC ID) | K2A11 |
| Hit Gene Code | At5g05210 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Surfeit locus protein 6 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At1g75850
| Sequence (A. th genome BLAST matches underlined) | >46-K021325-022-579-F06-8409 AGGTTCTGCAGCTCATTTATGCATCTATTAACGTTTCCATTCTTAAAGGGTTTCAATTCG CTGTATAATCGGCTGAATCTGAAAACCTTGAATAGGTCGACCACTGTAAAGATAAGTTGG CTCAGTATTATCTGATGGAGTGCATAATTCTAGTCTTTCCTGATGACTATGGAATCCTCC CTATAGTGAGANAAAAANNNTAACCTCATAAGATCTAGAACATGAACACCCCTGCTTCTT CAAAACTCCCCGTGGCTCTTTAGGTATTAGGGTAAACGTCCAACTTCGCCACCCAGACTT AGAAACCATAAAGCAATACCTTCTTAAACGCCTCAAAAGAGACCATCGGAATTCACCGTC GATACCACTTTACTCTTACTCTGGACGACTCCGCAGAGGTGACTATCCTCACATCCCCCG AGTAAAAGGAAAACAAAGTTCATCAAAAAAAAACTATAGTGATCTACTACCTAAAAACCG CTCTATGTTANATCTCGTATGGGACCCTCCC |
| GenBank Accession | FR812628 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:28482480 - go to primer design |
| BLAST e Value | 6e-51 |
| Hit Clone Code (BAC ID) | T4O12 |
| Hit Gene Code | At1g75850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | VPS35 homolog B |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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