SimpleSearch - Line and FST details
Line specific information
| Line ID | 580F04 |
| Vector Used | pGABI1 |
| Line Availability | available as T3 set from NASC (N455648) |
| Segregation Analysis | 50:38:25 |
| Confirmed for Hit | At5g43518 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 92133, 92166, 92167, 92168, 92169 |
| Note |
Gene hit At5g43518
| Sequence (A. th genome BLAST matches underlined) | >30-K021349-022-580-F04-8409 ATTGAATAATCCTGGCTGCCAATATTGCTGTTTAATGTTCATTAAATCCAAAGCCATTGG ACATGTAGTTTTGAACGCATTGTAACTTTGTTAAACATTAATAATAATAAAAAATATTGC TGTTTAATGTTCATCCATGTCCTTCCTTTTACAATAATGAACATGTATAATAATCTAACA GTTTTGTAGTGTGCATTAAACATGAAATTTATTGGGAAACATAAGTCCTTGACAAATAAA AAAATATTTTTGAAAAATTAAACTTATTCATTATAATCAAGGAAACTGTTAGTTTTTTTC TAAACATTTTACATTTAAACAAATTTATTTTGCTCATCTATACTGTAAATCTATTTTATT ATATAAAATACGGGTTTGAAAGTTTTTTAAAGGGTCAAAGTTTTTAATCACCGTCACATC TCTAAATAAATAAGGTTCCAATATGTTTGATTATGTTACATATTTACCTAAACCTCTTCC GAGTTACGATAGAGAAAATGAAAGAAAACAAATCTTCAAATCA |
| GenBank Accession | BX653515 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17484755 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MWF20 |
| Hit Gene Code | At5g43518 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Putative membrane lipoprotein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g27650
| Sequence (A. th genome BLAST matches underlined) | >30-K021290-022-580-F04-8409 CATGCCTCGCCGAGAATATATAATCATCTCCTCCCGAATCGTTTACCGACTCCCCCTAAT TCTCATACTTCTTCCTTGTTTTCGCGTCAGAATTCCTGGACCAAGTTTAGATATTTGTAA TGTCAGTCTCAATCGCGTTTGCCTCTTAAAACTACCAAAAAAAAAGATCCGTTAAATTGG AATTTCCCCTTCCGTTAATAAACCTAAAAAGCTCTTCTCTAAAAAAAAGCGTTTAAATTG CCTTTCTTTAATTTACATATCCCGAGGATTTATGTCCAATATCAGGCCAAACCTGGTCAC TGGTATAAAAACCGAAAAAAATTTTCCCCAAATTCAAATATCTATAAAATTGACGAACAA ATGTGAAAACCCCTGAAACCTTTTCCCCACAATTACATCCAAGTTGCAAAATACATTAAG ATATTT |
| GenBank Accession | BX653514 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:13803581 - go to primer design |
| BLAST e Value | 2e-54 |
| Hit Clone Code (BAC ID) | T29A15 |
| Hit Gene Code | At4g27650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Eukaryotic release factor 1 (eRF1) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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