SimpleSearch - Line and FST details


Line specific information

 
Line ID 584E02
Vector Used pAC161
Line Availability available as T3 set from NASC (N456018)
Segregation Analysis 50:27:16
Confirmed for Hit At5g65180
Parent of DUPLO pair 12021
Parent of pair(s) none

Gene hit F26K9

 
Sequence (A. th genome BLAST matches underlined) 
>13-K021756-022-584-E02-8409
NNNNCCGTCGTATTCGGACATGAGCATTTACAATTGAATAATCCTGACATCTTAATTGTA
TATTCCTTATTTCGATATTGGCTATCCATTCAAGTTTAGGTTGTTGCTTTGTTCTACTAT
TAATATAGCTCGGCCTTGTGATTATCTATGGGATCCTCCCTATAGTGAGAGNNANNGNTC
NCCGCCCTACNCNGAGNNGNNANCNCGNNGNCACCCCCGGGGGGGGGGTTGGTTTATTCT
ATGGGATCCTCACTATAGTGAGATGAGAGTCGNGGGAACCCTCCCAAAGTGGGGAGCANC
AAGTTTTTGATAATCGGAGAATAAAAGAGAGAGACTTTAGATAGAGAGAAATAAAGGGAG
GenBank Accession BX654872 [GenBank]
Graphic View Graphic view of sequence BX654872 of line 584E02
Predicted Position of Insertion Chr3:23181093 - go to primer design
BLAST e Value 2e-41
Hit Clone Code (BAC ID) F26K9
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g65180

 
Sequence (A. th genome BLAST matches underlined) 
>13-K021752-022-584-E02-8409
ATTGAAGATTCTCCGAATTCCGATTCCGGATATTCCAAACTCACTAAGTTATTGAAATGT
CTGAGCAAATTATTGAACTTGCAAGATTGCCAGACCTTTACCTGTTCCCGTAGCGCTTCC
CTAAGATGATTTACCAGAGATGTCCTACTTTCCTCAACAGATTTAAGTTTCTC
GenBank Accession BX654871 [GenBank]
Graphic View Graphic view of gene At5g65180
Predicted Position of Insertion Chr5:26047166 - go to primer design
BLAST e Value 1e-64
Hit Clone Code (BAC ID) MQN23
Hit Gene Code At5g65180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ENTH/VHS family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37