SimpleSearch - Line and FST details


Line specific information

 
Line ID 587H06
Vector Used pGABI1
Line Availability available as T3 set from NASC (N456346)
Segregation Analysis 42:31:20
Confirmed for Hit At2g29390 At2g29400
Parent of DUPLO pair 6785
Parent of pair(s) none

Gene hit At2g29390

 
Sequence (A. th genome BLAST matches underlined) 
>48-K021350-022-587-H06-8409
TATCCGGAATGAGCCTTTACAATTGAATATATCCTTGAACGTCTTCCTAACTTGCTTTTC
TGCGTGAGTGACTGGATGGATGGTGTCAATGATATACAATTGCCTTCAGTTTTCGTGGAA
TTGAACAAATTTTATCTCCCTTTGGCAATCATGTTTAGCTCTTTAGTTTGACAGTTCTAG
CTGTGACACTGACCCTTCTTTGTGGCGATGATGCAGTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX655231 [GenBank]
Graphic View Graphic view of gene At2g29390
Predicted Position of Insertion Chr2:12612325 - go to primer design
BLAST e Value 3e-99
Hit Clone Code (BAC ID) F16P2
Hit Gene Code At2g29390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sterol 4-alpha-methyl-oxidase 2-2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g29400

 
Sequence (A. th genome BLAST matches underlined) 
>48-K021291-022-587-H06-8409
NNNNAAGTAGTATCCGGACATGAGCCATTTACAATTGAATATCCATCAATTGATTTACCT
TTTGTCGTAATTGTTAATTTGAAGCAATGGTGGTCACTGGATAATCGGTGTCACAGAAAA
GGCGACTTCTTTTCTGACGGCTTTAGAATCTGGAATGAGCACATTAAGCTCTCATCAATG
CTCATCATTGCGCCAGCGTTGTCAAATTCCCCGCAATAGTTGGGAGCTGAAAATACTGTA
ACAAGTTGTCTTTCTGCAAAGAACTCATACCCATCTTCAACAACCTATAAACAGAGCCAA
TACACTCAAATTAAGGTTGCACAGTTTTCATAATAAACTAAATGGCAGATATAACTCAAG
TTAAAACCTGGTGGGCACGACAGATAAGGTCCATGTCATGTTTCTCCAAGAACTCTGCGA
CTTTGTCAGCTCCAAAAGTGTATGAAACACCACGATCATTCATGCCCCAGCCTACGTCTC
CACTAGGATCCGACCATAGTAAATCACATACCAAACCAGACTCCGGAATATCCATCGGCC
GTGCAATATTTCTAATCTGGTCC
GenBank Accession BX655230 [GenBank]
Graphic View Graphic view of gene At2g29400
Predicted Position of Insertion Chr2:12613733 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F16P2
Hit Gene Code At2g29400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation type one protein phosphatase 1
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37