SimpleSearch - Line and FST details


Line specific information

 
Line ID 590B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N456560)
Segregation Analysis 50:48:48
Confirmed for Hit At5g41180
Parent of DUPLO pair 2461
Parent of pair(s) none

Gene hit F18F4

 
Sequence (A. th genome BLAST matches underlined) 
>26-K021768-022-590-B04-8409
TATGTACACTATGAATTGAATAGTGACATGCTTATTGCAGCTGCACTTTAACCATCTAAT
GCTATGAAATAGGGTATCACACATCTTAATCATCCGGTCTTTTTACTACAAATACTTCCA
CACAATCTCTTTGGAAGTCGACCACTAATTTTTGATCCTTATAGAGAAATCATTGTAATA
CATATATCTTCTTGGTTATAGATAAATTACGTATATGTCTAATGCCTTTGCTACGGTTGT
CATTAACTAACCTTATGCCCTGGAACCCCCCCTATCGTAATGTAAGAAAAGTTAACCGTT
AAAATCTTAAGATAATGGATCTAAAAACGCAGAATGTGAAACGANNAAAATAAAA
GenBank Accession BX655616 [GenBank]
Graphic View Graphic view of sequence BX655616 of line 590B04
Predicted Position of Insertion Chr4:10829436 - go to primer design
BLAST e Value 6e-51
Hit Clone Code (BAC ID) F18F4
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g41180

 
Sequence (A. th genome BLAST matches underlined) 
>07-K118741-0022-590-B04C-35St
TTCGCAGACCCTTCCTCTATATAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGG
GGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTGAATACCAAAGGAGA
TAGGAAAGTTAAAGAAACTCAAGATCTTAGACCTGGGAAACAATCATTTGACAGGACCGA
TTCCAGCAGAGATCGGGAAATTGTCAAGGATTAAGACAATGTAAGAAAATCTTTAAGAGA
ATGTCATCTATCCGATAATGTGCTGAGATAACCATTTTGTGTCTCTTTAACACCACAGAA
ACCTTCAGTCCAATGGTTTAATAGGAAAGTTACCTCCAGAGATTGGAAACTTGAAGCACC
TTAAAGAACTTCTTATTGGCAGGAATAGGCTTCGAGGAAGTATTCCTATTGCCGCGAAAA
CATCAAAAAAGTGAGTTTAGCTAATAGTCCAAGGTAGCATAAGATGGAAACTTAATGTTT
ATGATTGAAATGTTAATGTATCTTCTTTTTGTGTTGGTCAGGTATGCTTCAAATCCAAGT
GCAAACATCAGTGGTTTGTGCAAGTCTTCTCTATTTAAAGTGGCAGATTTCTCTTACAAC
TTTTTCGAGGGAAGAGTTCCGAGTTGCTTGGATTACCTCCCAATGTATTTCTTATAAGAC
CCTTTTTCTAGCTTTCCTTTATTTTTCTCATTTGATAATATCTCTCTGTATCATTGAACA
TCATTGTAGAACGAGCTTTCAAGGAAACTGCATGAAAACCATGGATGTTAAGCAGAGACC
TCTNTCAGAATGTGGTTTGTAGAATATGAGTTTCACTTTCTTGATGCTGATAATCGTTTC
TTTATCTTGTTTTTCATTTTGAAATTNGTTTCATTGGTTAGCTCGCTTAGCTGTAACCGT
GenBank Accession HG969053 [GenBank]
Graphic View Graphic view of gene At5g41180
Predicted Position of Insertion Chr5:16484750 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MEE6
Hit Gene Code At5g41180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation leucine-rich repeat transmembrane protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX655617 [GenBank]


Last Updated on 10.06.2021 13:37