SimpleSearch - Line and FST details
Line specific information
| Line ID | 596C03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N457147) |
| Segregation Analysis | 50:48:48 |
| Confirmed for Hit | At5g42280 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 420, 4055, 4073, 93695, 93700 |
Gene hit At5g42280
| Sequence (A. th genome BLAST matches underlined) | >13-K118465-0022-596-C03C-8409 ATTTACATTTGTCGAGCAAGTCGCATTAAGATAGAACTTGCAGATAGAACAATGATAATA TACCTTTTGTAGTGGAACCTGACAACATTTGCATTTCAGGTGATTTCCATCAGATAAACA GGCACTATCACCATAATCATCATCACCATCACCATCATTGTCATTACTAACACCACTAGC GACGGCATTACTGTTGACGCTTTCTTCGTAGTCATCATCAACTTTGTATACCAATTCATT TTTAGAGGCATCATCATCGTTGTTGATGCTGAGTTCCAAAGCCCATGTCGAATAATCATT ATTGTGGTCATCATCATCATCATCATCATCATCATCCTCATCCTCATCATCCTCATCCTC ATCCTCATCATCATCATCTTCATCATCTTCATCATCAACAACAACATCATCATCATCATC ATCATCATCATCATCATCATCAACAACATCATCATCGTTATCATCATCATCATCATCATC ATCATCATCATCATCATTATTATTATTATCGTCATTACTATCAGCCTCAACATTATTGTT GACATCGTCTTCGTAGACAACATTATTGTTGACGTCGTCTTCGTAGTCCTTATCAAATTC GTGTACCGCTTCTTCACGAGTAGAAGCACCATTGGATAAAGAGTCACCATCACCATCATC AGCAGCAACATCACTATTGTTGTCGTCGTCTTCACAATCATCATCAACTTCATATATTGC TTCTGCTGAAGAGGACTTGTCTTTCCAGTTTCGGGATGAAAAATCAGAAGTCGGATCTAC |
| GenBank Accession | HG969055 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16906855 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | K5J14 |
| Hit Gene Code | At5g42280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cysteine/Histidine-rich C1 domain family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR356354 [GenBank] |
Gene hit T2G17
| Sequence (A. th genome BLAST matches underlined) | >19-K025556-022-596-C03-8409 AGTCTTGGGTCTCTATGGGATCCTCCCTATACTGCGGAATATCGGTCGCATTCACTGCCA TATGAGGGCTGCCCACTTGTATTATCTGCTCATCTACGGTACCCTCCCAAAAGGGGGCAT TAAATACGAGTGTGTTAGATTTTGCTGTGTTTTTTTTCTTTCTTTAAACTAATTTTTTTT TANGTTTAAATAATTAGGTTCATANTTTTCTATGGGATCCTCCCTATA |
| GenBank Accession | CR356353 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:8656585 - go to primer design |
| BLAST e Value | 4e-09 |
| Hit Clone Code (BAC ID) | T2G17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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