SimpleSearch - Line and FST details
Line specific information
| Line ID | 596E10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N457178) |
| Segregation Analysis | 50:49:48 |
| Confirmed for Hit | At3g46520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1090, 5305, 5389, 5421, 86124, 86134, 86143, 86155, 86158, 86160, 86163 |
Gene hit At3g46520
| Sequence (A. th genome BLAST matches underlined) | >77-K025557-022-596-E10-8409 NNTTTTGTCTTAATCCGGACATGAACCATTTACATTGAATATATCCCGTACCACTCTGGG CGCGCCTCCCTCTAGGGAGGTGTAAGTCACCACGAGACTATGGCATTCTCGGAATATAGC TATTGACCAACTGGGGTCTCTCTGAGCCCACGCCAAGTATCGGGACCGTTCCTAAAGCGT TTATGCCTGATATGTGCCTTACTGAGCATGTCCTGAATATAAGCACGTACCTTAAATTCC CTCCTTTCGAATCCGATCATGGATGTTTGCCCCGTAACTTCTGGAGACTATAAATTCTCT CCTCTCATGTTTATCACTTGACCTTCTGTCACCTCTAAGCTCTTCTCCACAGATGATCTG GTTTTGGAAACTTCAATCTATTGATCATACACGAAAGCAATGTTATAAAGCTTCTCCTTC ATGTCACTGACAATCTCGGGCGCGGTACTTGTGGTCATTTATTACCCCGCTTCTGTCATG AATACCATGAAGCGGAAAAATCAAGGAAATAGCTTT |
| GenBank Accession | CR356404 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17129750 - go to primer design |
| BLAST e Value | 4e-18 |
| Hit Clone Code (BAC ID) | F12A12 |
| Hit Gene Code | At3g46520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | actin-12 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g78970
| Sequence (A. th genome BLAST matches underlined) | >77-K025556-022-596-E10-8409 NNTTTCGCCTTATTCCGGAATGAAGCCATTTACATTGAATATGTCCCGTTACGAATGATG GGCGAAACATTTTGAATTGAAGTATCGTACATACCTAGTGCAGAGCCTGATCAGAAGCAT TATCTCTGATCCTACTACGTCTCTTTGAGTCCAGGCCAAGAAATGGACGGACCTGCGCAC AGTTAAACATTCCTTGTGCCTTTCATGAGCATGCCGCTATGAGATCCTCCTTATAAAGAG CGACGGCATTCGCCATACAGTTGCCGATATAGACCCACACATATAGGGTGACAGAGATTT GATTCCTCTTCATCGTGCTGCCAAACTTATCATCAATTCACAACTTGAAAACGGCGATTT TCCTCAACAGGTTACTTCTTTTTAGACATGATCTATGGGATCCTCCCTATAGTGAGACGT ACACATCTCTCTGCCAAATAAGGACGGTATAAAAAGAATCATTTTATATGACTGCCAAAA AAATACAAGAAATGAAGGATAG |
| GenBank Accession | CU589804 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29707190 - go to primer design |
| BLAST e Value | 7e-57 |
| Hit Clone Code (BAC ID) | YUP8H12R |
| Hit Gene Code | At1g78970 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | lupeol synthase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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