SimpleSearch - Line and FST details


Line specific information

 
Line ID 596G12
Vector Used pAC161
Line Availability available as T3 set from NASC (N457204)
Segregation Analysis 50:48:47
Confirmed for Hit At5g25280 At5g43180
Parent of DUPLO pair none
Parent of pair(s) 10769

Gene hit At5g25280

 
Sequence (A. th genome BLAST matches underlined) 
>48-K112877-0022-596-G12C-8409
CATTTCATTGAATATATCCATCGCTGTTTCTTCCACAAACCTAGCAATCATCACATAATT
CCGGATTCGAGGAGAAGATGTATGTGCTCTCCGACAACGCATCCTGGTTCATTCCGGTGT
AGTCTACACAAGAACGTCGCGAATCCACATGGTCAAGGTACAGCTTCGTATACAACGAAT
GGATTGAATATGCGTCGATCTGCGATGACGAATTCTCTTGTGAGAATTGGTGGTGTTGAA
GGTGAATGGGTGCGAAGAGCTTTGACTACTTTGATTAGACCATCTTCACATCAACTAAAG
AGAAGATCTGCTTATGAGCCTCGTCGTAGTAGACTCGCATCTATGTCGAAAGCAGAAGAT
CTTTGA
GenBank Accession FR812888 [GenBank]
Graphic View Graphic view of gene At5g25280
Predicted Position of Insertion Chr5:8774193 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F21J6
Hit Gene Code At5g25280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation serine-rich protein-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g43180

 
Sequence (A. th genome BLAST matches underlined) 
>95-K025556-022-596-G12-8409
CTGTGATGACAGTCATTCGTGCTACTACGGCGCAAACGGCCGCGGTGACTGCTTTCGGAG
AACTCAAATCTTGGATTGGAGTCCCAGTTAAGAATCTCCATCTTGACTGTACTTCCATTA
CTAGCAATGGTGGAAGAGTAAAGTGCATGGTGACAGTGTTCGGCATTCTGAATCTCACCG
ATTACTCCTTCTTCGATGAGAGCCGGCGTCTATGGGATCCTCCCTAGAGCGATTACGTTT
GCTCTCAAAATTTTCAAAAGATGATAAATATGAATACGTAAACATGCATACACACTTTTG
TTTTACATATTAATAAACAATCTATGGGATCCTCCCTATAGTGAG
GenBank Accession CU589825 [GenBank]
Graphic View Graphic view of gene At5g43180
Predicted Position of Insertion Chr5:17337755 - go to primer design
BLAST e Value 5e-45
Hit Clone Code (BAC ID) MMG4
Hit Gene Code At5g43180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein, putative (Protein of unknown function, DUF599)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37