SimpleSearch - Line and FST details
Line specific information
| Line ID | 600G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N457581) |
| Segregation Analysis | 50:46:28 |
| Confirmed for Hit | At2g43570 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F14D17
| Sequence (A. th genome BLAST matches underlined) | >39-K023925-022-600-G05-8409 CCCGAGTGATCCCCTGGTCCGCTGTCCCCGACAATCCCATAGCCCTTTATTCTGCGCATG ACAGATGAAGTGAAATTCCTTATAAAAAAGACTGGTCAAATTTATTATAGGGAAATTCCC TAAAATGGGGACAACCCCCTCCCCAGACCAAGAGAGGGGGGGGGACGATATTTTGAAGAG TAATAATATATTTTCCATACAAGAACTAAATTGAAAATAAAATGAAAAAGGCGTATACAT TCGAAACCGAAACGATCTTCACTTAGAAATCTTGAGAACATTATATTCATCTAGAATTCT ATCATATAAAAGTAGAAAGAAGAGCTATCTCCCAACACGGGGAGGTATGCAGCATACTTA GAAAAAAATGTAATAATACTGAAAACAATATCCAAACTGATAAATAAAACAAGTATTATT GACACTAAGAATACATAGTAAGAGATCTAAGAAAATAAAACTCCAAACGCGACCATCTAC TAATAGCAGTAGACACATCAAGACATCAGAACTCACAATCGCCAGAGAACTTAGGAATCA CCCCCCCAACAAGGATGAGATACATAACAAACGGCCATGGTCAATATCCAATACGACTCT AACTTCTTCTCCAGACTTAATAATCAAGCTTGGATAGAGACACAAAGGAATGTATTCTAA TCAAATTATAAGACTCCTATCTACATGCCTTAAAAGTTATCCAAATCAAAAACTTACATT ATAATTAGTCTATCTGTATCATAAACAAGTCCATAACTAAACTGATGAAAACTGAACACG ATCAAATGCAACACACTTATCACATATCGACCAATACGTTATAAAATCACAATCGCAATC ATTCAAAAGACTCACGAACATACTTATGAAAAAATCCACTACCTCACTTGTACAATATAG ACTATATTTATTATTTACACTGTATCGAACAGATACTAATATATCCCTATATCATTTAAC GACATTAATTCCATAACGTAATCTATAACAACTCTAACTACATATTTAGACGAACACATA TGTATCTGACACGACACTAAATAATATTGTAAAGATAATATTCATCATAAAATATAAAAA TTGCATCAATACTCTTAAATCAAGTCAGCTTTCCATACTATGACTCAACATATCTTCATA AGTAATCATACTTGATTATCGTATATCCACTCCAAATTACCTTGCTTACTACATGATCTG CGGGTGCCATGTTATTATTTACTGGAGATTTGCTTAAATGCTCTCTACCTTCACTTATAG CACTAAAAAGTAGTTCATAAATCAAACTAGTAATAAATCGACTATAAGCCATCTGCATCA ACTTCCAC |
| GenBank Accession | FR813035 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16457319 - go to primer design |
| BLAST e Value | 6e-04 |
| Hit Clone Code (BAC ID) | F14D17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g43570
| Sequence (A. th genome BLAST matches underlined) | >39-K023961-022-600-G05-8409 GCACTGCATGACACATAAGCACTTACATTGAATATACTCCGACGGAAGCCTCCCTATAGT GAGACCGTACGGCTGTACCTTGTTGCGATCCGCGCTACATTGCGTTAAATTGATGGACCC CCCAAGTGCCGCATCCGGAGAGTACTGCGACACAGAGAAACCAGAGTTCCCATGTGCACA AGGAAAGGGCTACTATGGCCGTGGTGTTTTCCAACTCGGAGGGGGGGACTGCTACCGACT CTGTTTCACAGGGCGTGGGCGAGAACTTCTTGACAACGGCTTAGACCGCTGCTCCATACT CGGCAATTCCGAGACGCAGGGATTCCCGCCACAGGGAGACAGGGGGTCCCCCGAGCCATG GGAGAACTGGGGAATCCGCCGTAAAGGGAGCCTCGGGAACCCCCGATAAAGGGAGTCTCA TTTGTCTCGAGGAAAGGGGTGACTGCAACAAGGTAGAACCATATGGACGCAAGAACCAAA CCTATAGTGGTGGA |
| GenBank Accession | BX892293 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:18076851 - go to primer design |
| BLAST e Value | 4e-40 |
| Hit Clone Code (BAC ID) | T1O24 |
| Hit Gene Code | At2g43570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | chitinase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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